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crds_analyzer
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Tau histograms for each comb tooth

master
michael 2021-08-10 12:12:42 -07:00
parent 04b549d106
commit 3239ac2a2c
4 changed files with 113 additions and 25 deletions
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15
app.py
View File

@ -2,16 +2,13 @@ import sys
import crds_calc
from pandas import read_csv
from PyQt5 import QtGui, QtWidgets, QtCore
from memdb import mem
from db import mem
from mainwin import Ui_MainWindow
from widgets import BaseGraph
import pathlib
class AppWindow(QtWidgets.QMainWindow, Ui_MainWindow):
correlation_complete = QtCore.pyqtSignal()
fitting_complete = QtCore.pyqtSignal()
def __init__(self):
super(AppWindow, self).__init__()
self.setupUi(self)
@ -43,7 +40,9 @@ class AppWindow(QtWidgets.QMainWindow, Ui_MainWindow):
return
mem['x_data'] = data.transpose()[0]
mem['y_data'] = data.transpose()[1]
mem['timestep'] = mem['x_data'][1] - mem['x_data'][0]
timestep = mem['x_data'][1] - mem['x_data'][0]
mem['timestep'] = timestep
self.spin_timestep.setValue(timestep)
self.raw_data_graph.plot() # Graph new stuff
# self.groups_graph.clear() # Clear old stuff
@ -206,7 +205,11 @@ class AppWindow(QtWidgets.QMainWindow, Ui_MainWindow):
mem['shift_over_fit'] = self.spin_shift_over_fit.value()
# print(mem['fit_equations'])
self.peak_fit_viewer.plot()
self.graph_tabs.setCurrentIndex(4)
mem['time_constants'] = crds_calc.get_time_constants(mem['fit_equations'])
self.tau_viewer.plot()
self.graph_tabs.setCurrentIndex(5)
self.fit_button.pressed.connect(init_fit)
# Show equation

5
memdb.py → db.py
View File

@ -1,5 +1,6 @@
from sqlitedict import SqliteDict
from varname.core import nameof
from hashlib import md5
class ModSqliteDict(SqliteDict):
def __init__(self):
@ -12,4 +13,8 @@ class ModSqliteDict(SqliteDict):
name = nameof(item)
self[name] = item
def set_key_value(self, item, value):
name = nameof(item)
self[name] = value
mem = ModSqliteDict()

84
ui/mainwin.ui
View File

@ -7,7 +7,7 @@
<x>0</x>
<y>0</y>
<width>1343</width>
<height>746</height>
<height>653</height>
</rect>
</property>
<property name="windowTitle">
@ -39,12 +39,57 @@
<property name="geometry">
<rect>
<x>0</x>
<y>-158</y>
<y>0</y>
<width>261</width>
<height>818</height>
<height>878</height>
</rect>
</property>
<layout class="QVBoxLayout" name="verticalLayout_2">
<item>
<widget class="QGroupBox" name="groupBox_5">
<property name="minimumSize">
<size>
<width>239</width>
<height>0</height>
</size>
</property>
<property name="maximumSize">
<size>
<width>239</width>
<height>16777215</height>
</size>
</property>
<property name="title">
<string>GENERAL CONFIG</string>
</property>
<layout class="QGridLayout" name="gridLayout_8">
<item row="0" column="0">
<layout class="QFormLayout" name="formLayout_7">
<item row="0" column="0">
<widget class="QLabel" name="label_18">
<property name="text">
<string>Timestep</string>
</property>
</widget>
</item>
<item row="0" column="1">
<widget class="QDoubleSpinBox" name="spin_timestep">
<property name="decimals">
<number>6</number>
</property>
<property name="minimum">
<double>-99.989999999999995</double>
</property>
<property name="singleStep">
<double>0.010000000000000</double>
</property>
</widget>
</item>
</layout>
</item>
</layout>
</widget>
</item>
<item>
<widget class="QGroupBox" name="groupBox">
<property name="minimumSize">
@ -268,7 +313,7 @@
<rect>
<x>10</x>
<y>160</y>
<width>235</width>
<width>221</width>
<height>53</height>
</rect>
</property>
@ -804,9 +849,6 @@
<string>Time Constant</string>
</attribute>
<layout class="QGridLayout" name="gridLayout_7">
<item row="0" column="0">
<widget class="TimeConstantGraph" name="tau_graph" native="true"/>
</item>
<item row="0" column="1">
<widget class="QScrollArea" name="scrollArea_2">
<property name="minimumSize">
@ -830,7 +872,7 @@
<x>0</x>
<y>0</y>
<width>279</width>
<height>633</height>
<height>548</height>
</rect>
</property>
<widget class="QGroupBox" name="groupBox_3">
@ -904,6 +946,9 @@ p, li { white-space: pre-wrap; }
</widget>
</widget>
</item>
<item row="0" column="0">
<widget class="TimeConstantGraphsViewer" name="tau_viewer"/>
</item>
</layout>
</widget>
</widget>
@ -924,9 +969,6 @@ p, li { white-space: pre-wrap; }
<string>File</string>
</property>
<addaction name="actionOpen_CSV_File"/>
<addaction name="actionOpen_MATLAB_File"/>
<addaction name="separator"/>
<addaction name="actionExport_Binary"/>
<addaction name="separator"/>
<addaction name="actionQuit_2"/>
</widget>
@ -1002,6 +1044,14 @@ p, li { white-space: pre-wrap; }
<string>F1</string>
</property>
</action>
<action name="actionSave_Options">
<property name="text">
<string>Save Options</string>
</property>
<property name="shortcut">
<string>Ctrl+S</string>
</property>
</action>
</widget>
<customwidgets>
<customwidget>
@ -1016,12 +1066,6 @@ p, li { white-space: pre-wrap; }
<header>widgets</header>
<container>1</container>
</customwidget>
<customwidget>
<class>TimeConstantGraph</class>
<extends>QWidget</extends>
<header>widgets</header>
<container>1</container>
</customwidget>
<customwidget>
<class>AddedPeaksGraph</class>
<extends>QWidget</extends>
@ -1040,6 +1084,12 @@ p, li { white-space: pre-wrap; }
<header>widgets</header>
<container>1</container>
</customwidget>
<customwidget>
<class>TimeConstantGraphsViewer</class>
<extends>QTabWidget</extends>
<header>widgets</header>
<container>1</container>
</customwidget>
</customwidgets>
<resources/>
<connections/>

34
widgets.py
View File

@ -4,7 +4,9 @@ import matplotlib
matplotlib.use('Qt5Agg')
from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg, NavigationToolbar2QT as NavigationToolbar
from matplotlib.figure import Figure
from memdb import mem
from matplotlib import colors
from matplotlib import pyplot as plt
from db import mem
from crds_calc import exp_func
class MplCanvas(FigureCanvasQTAgg):
@ -161,4 +163,32 @@ class FitsGraphViewer(QtWidgets.QTabWidget):
# # ax.set(xlabel='x-label', ylabel='y-label')
class TimeConstantGraph(BaseGraph):
pass
def __init__(self, x):
super().__init__(x)
self.peak_index = 0
def set_peak_index(self, i):
self.peak_index = i
def plot_data(self):
data = []
for g_i in range(len(mem['time_constants'])):
data.append(mem['time_constants'][g_i][self.peak_index])
self.canv.axes.hist(data, bins='auto', alpha=0.8)
class TimeConstantGraphsViewer(QtWidgets.QTabWidget):
def __init__(self, x):
super(TimeConstantGraphsViewer, self).__init__(x)
layout = QtWidgets.QGridLayout()
self.setLayout(layout)
def plot(self): # Create tabs & plot ALL data (each individual graph)
self.clear()
for p_i in range(len(mem['time_constants'][0])):
tab_name = str(p_i+1)
tau_graph = TimeConstantGraph(self)
tau_graph.set_peak_index(p_i)
self.addTab(tau_graph, tab_name)
tau_graph.plot()