custom start & end + small math fixes
parent
8f4f868c85
commit
22b7fe7333
34
app.py
34
app.py
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@ -17,8 +17,6 @@ class AppWindow(QtWidgets.QMainWindow, Ui_MainWindow):
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super(AppWindow, self).__init__()
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self.setupUi(self)
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# Signals
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# Graphing actions
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self.csv_selected.connect(self.raw_data_graph.plot)
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@ -58,6 +56,10 @@ class AppWindow(QtWidgets.QMainWindow, Ui_MainWindow):
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mem['v_data'] = data.transpose()[2]
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except IndexError:
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display_warning('No voltage column detected. VThreshold algo will not work.')
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self.groups_graph.clear()
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self.tau_graph.clear()
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self.graph_tabs.setCurrentIndex(0)
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self.csv_selected.emit()
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@ -68,6 +70,26 @@ class AppWindow(QtWidgets.QMainWindow, Ui_MainWindow):
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# Inputs
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def switch_grouping_algo():
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algo = self.combo_grouping_algo.currentIndex()
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self.grouping_config_area.setCurrentIndex(algo)
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self.combo_grouping_algo.currentIndexChanged.connect(switch_grouping_algo)
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def set_start_time():
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if self.check_custom_start.isChecked():
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self.spin_start_time.setDisabled(False)
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else:
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self.spin_start_time.setDisabled(True)
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self.check_custom_start.stateChanged.connect(set_start_time)
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def set_end_time():
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if self.check_custom_end.isChecked():
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self.spin_end_time.setDisabled(False)
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else:
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# mem['end_time'] = self.spin_end_time.value()
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self.spin_end_time.setDisabled(True)
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self.check_custom_end.stateChanged.connect(set_end_time)
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def init_correlate():
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groups_raw = None
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algo = self.combo_grouping_algo.currentIndex()
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@ -76,14 +98,20 @@ class AppWindow(QtWidgets.QMainWindow, Ui_MainWindow):
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display_error('VThreshold not yet implemented.')
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return
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elif algo == 1:
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try:
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groups_raw = crds_calc.spaced_groups(
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mem['x_data'],
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mem['y_data'],
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self.spin_group_len.value(),
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self.spin_min_peakheight.value(),
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self.spin_min_peakprominence.value(),
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self.spin_moving_average_denom.value()
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self.spin_moving_average_denom.value(),
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mirrored=False if self.check_skip_groups.checkState() == 0 else True,
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start=self.spin_start_time.value() if self.check_custom_start.isChecked() else None,
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end=self.spin_end_time.value() if self.check_custom_end.isChecked() else None
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)
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except (ValueError, TypeError):
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display_error('Failed to correlate. This could be because no groups are being detected.')
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mem['groups_correlated'] = crds_calc.correlate_groups(groups_raw)
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self.correlation_complete.emit()
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35
crds_calc.py
35
crds_calc.py
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@ -8,7 +8,10 @@ def spaced_groups(
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group_len: float,
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peak_minheight: float,
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peak_prominence: float,
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sma_denom: int
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sma_denom: int,
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mirrored: bool=True,
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start=None,
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end=None
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):
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"""
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Use SpacedGroups algo to separate groups
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@ -32,7 +35,21 @@ def spaced_groups(
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def isolate_group(i):
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i_min = i - t2i_range(group_len)
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i_max = i + t2i_range(group_len)
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return y_data.tolist()[i_min:i_max]
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# NOTE: Groups that are too short just get left out. Too bad!
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group = y_data.tolist()[i_min:i_max]
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return group
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# Check if custom start & end values are set
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if not end == None:
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stop_ind = t2i(end)
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x_data = x_data[:stop_ind]
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y_data = y_data[:stop_ind]
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if not start == None:
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start_ind = t2i(start)
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x_data = x_data[start_ind:]
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y_data = y_data[start_ind:]
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# Detect peaks w/ averaged data
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x_data_av = np.delete(x_data, [range(int(sma_denom / 2))])
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@ -51,10 +68,8 @@ def spaced_groups(
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for i in range(len(peaks)):
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item = peaks[i]
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next_item = 0
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prev_item = item-10
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try:
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next_item = peaks[i+1]
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prev_item = peaks[i-1]
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except:
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pass
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@ -75,15 +90,23 @@ def spaced_groups(
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# Isolate group data
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groups_raw = [] # NOTE: Only contains every other group
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groups_raw = []
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for p in peaks_init:
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if mirrored:
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if peaks_init.index(p) % 2 == 0:
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groups_raw.append(isolate_group(t2i(p)))
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else:
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pass
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else:
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groups_raw.append(isolate_group(t2i(p)))
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for i in groups_raw:
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if len(i) == 0:
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groups_raw.remove(i)
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return groups_raw
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def correlate_groups(groups_raw):
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"""
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Overlay groups using `scipy.correlate`.
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@ -95,7 +118,7 @@ def correlate_groups(groups_raw):
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group_base = np.array(groups_raw[0])
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groups_adjusted = [group_base]
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for x in groups_raw[1:len(groups_raw)-1]:
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for x in groups_raw[1:]:
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# calculate how much to shift
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corr = correlate(group_base, np.array(x))
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shift = corr.tolist().index(max(corr))
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242
ui/mainwin.ui
242
ui/mainwin.ui
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@ -58,7 +58,7 @@
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<rect>
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<x>0</x>
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<y>0</y>
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<width>651</width>
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<width>811</width>
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<height>531</height>
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</rect>
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</property>
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@ -73,20 +73,50 @@
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<rect>
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<x>0</x>
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<y>0</y>
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<width>651</width>
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<width>601</width>
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<height>531</height>
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</rect>
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</property>
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</widget>
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<widget class="QGroupBox" name="groupBox_3">
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<property name="geometry">
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<rect>
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<x>600</x>
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<y>10</y>
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<width>211</width>
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<height>161</height>
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</rect>
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</property>
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<property name="title">
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<string>Time constant output</string>
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</property>
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<widget class="QTextBrowser" name="tau_output">
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<property name="geometry">
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<rect>
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<x>10</x>
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<y>20</y>
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<width>191</width>
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<height>131</height>
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</rect>
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</property>
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<property name="html">
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<string><!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
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<html><head><meta name="qrichtext" content="1" /><style type="text/css">
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p, li { white-space: pre-wrap; }
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</style></head><body style=" font-family:'MS Shell Dlg 2'; font-size:7.8pt; font-weight:400; font-style:normal;">
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<p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><br /></p></body></html></string>
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</property>
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</widget>
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</widget>
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</widget>
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</widget>
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<widget class="QGroupBox" name="groupBox">
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<property name="geometry">
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<rect>
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<x>10</x>
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<y>120</y>
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<y>10</y>
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<width>241</width>
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<height>111</height>
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<height>231</height>
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</rect>
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</property>
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<property name="font">
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@ -99,13 +129,13 @@
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<property name="title">
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<string>Grouping Config</string>
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</property>
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<widget class="QStackedWidget" name="stackedWidget">
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<widget class="QStackedWidget" name="grouping_config_area">
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<property name="geometry">
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<rect>
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<x>10</x>
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<y>50</y>
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<width>221</width>
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<height>31</height>
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<height>91</height>
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</rect>
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</property>
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<property name="currentIndex">
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@ -118,7 +148,7 @@
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<x>0</x>
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<y>0</y>
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<width>221</width>
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<height>22</height>
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<height>91</height>
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</rect>
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</property>
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<layout class="QFormLayout" name="formLayout_4">
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@ -148,8 +178,8 @@
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<rect>
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<x>0</x>
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<y>0</y>
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<width>211</width>
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<height>22</height>
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<width>221</width>
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<height>103</height>
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</rect>
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</property>
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<layout class="QFormLayout" name="formLayout">
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@ -170,6 +200,54 @@
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</property>
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</widget>
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</item>
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<item row="1" column="0">
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<widget class="QLabel" name="label_4">
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<property name="text">
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<string>Min peak height</string>
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</property>
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</widget>
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</item>
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<item row="1" column="1">
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<widget class="QDoubleSpinBox" name="spin_min_peakheight">
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<property name="decimals">
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<number>6</number>
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</property>
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<property name="value">
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<double>0.000400000000000</double>
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</property>
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</widget>
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</item>
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<item row="2" column="0">
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<widget class="QLabel" name="label_6">
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<property name="text">
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<string>Min peak prominence</string>
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</property>
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</widget>
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</item>
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<item row="2" column="1">
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<widget class="QDoubleSpinBox" name="spin_min_peakprominence">
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<property name="decimals">
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<number>6</number>
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</property>
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<property name="value">
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<double>0.001200000000000</double>
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</property>
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</widget>
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</item>
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<item row="3" column="0">
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<widget class="QLabel" name="label_5">
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<property name="text">
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<string>Moving average size</string>
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</property>
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</widget>
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</item>
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<item row="3" column="1">
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<widget class="QSpinBox" name="spin_moving_average_denom">
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<property name="value">
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<number>20</number>
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</property>
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</widget>
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</item>
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</layout>
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</widget>
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</widget>
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@ -198,7 +276,7 @@
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<property name="geometry">
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<rect>
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<x>10</x>
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<y>80</y>
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<y>200</y>
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<width>221</width>
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<height>20</height>
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</rect>
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@ -210,12 +288,64 @@
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<bool>true</bool>
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</property>
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</widget>
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<widget class="QWidget" name="formLayoutWidget_5">
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<property name="geometry">
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<rect>
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<x>10</x>
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<y>150</y>
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<width>233</width>
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<height>51</height>
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</rect>
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</property>
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<layout class="QFormLayout" name="formLayout_5">
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<item row="0" column="0">
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<widget class="QCheckBox" name="check_custom_start">
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<property name="text">
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<string>Custom Start Time</string>
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</property>
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</widget>
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</item>
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<item row="0" column="1">
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<widget class="QDoubleSpinBox" name="spin_start_time">
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<property name="enabled">
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<bool>false</bool>
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</property>
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<property name="decimals">
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<number>6</number>
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</property>
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<property name="minimum">
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<double>-99.989999999999995</double>
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</property>
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</widget>
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</item>
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<item row="1" column="0">
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<widget class="QCheckBox" name="check_custom_end">
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<property name="text">
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<string>Custom End Time</string>
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</property>
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</widget>
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</item>
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<item row="1" column="1">
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<widget class="QDoubleSpinBox" name="spin_end_time">
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<property name="enabled">
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<bool>false</bool>
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</property>
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<property name="decimals">
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<number>6</number>
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</property>
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<property name="minimum">
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<double>-99.989999999999995</double>
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</property>
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</widget>
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</item>
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</layout>
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</widget>
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</widget>
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<widget class="QPushButton" name="correlate_button">
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<property name="geometry">
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<rect>
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<x>60</x>
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<y>240</y>
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<x>50</x>
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<y>250</y>
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<width>151</width>
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<height>28</height>
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</rect>
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@ -236,7 +366,7 @@
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<property name="geometry">
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<rect>
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<x>10</x>
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<y>340</y>
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<y>350</y>
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<width>241</width>
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<height>181</height>
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</rect>
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@ -320,7 +450,7 @@
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<property name="geometry">
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<rect>
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<x>60</x>
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<y>530</y>
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<y>540</y>
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<width>151</width>
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<height>28</height>
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</rect>
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@ -341,7 +471,7 @@
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<property name="geometry">
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<rect>
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<x>10</x>
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<y>280</y>
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<y>290</y>
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<width>241</width>
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<height>51</height>
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</rect>
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@ -392,86 +522,6 @@
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</layout>
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</widget>
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</widget>
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<widget class="QGroupBox" name="groupBox_5">
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<property name="geometry">
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<rect>
|
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<x>10</x>
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<y>10</y>
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||||
<width>241</width>
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||||
<height>101</height>
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||||
</rect>
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</property>
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<property name="font">
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<font>
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<pointsize>8</pointsize>
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<weight>75</weight>
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<bold>true</bold>
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</font>
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</property>
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<property name="title">
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<string>Peak Detection Config</string>
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</property>
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<widget class="QWidget" name="formLayoutWidget_5">
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||||
<property name="geometry">
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<rect>
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<x>10</x>
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<y>20</y>
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<width>221</width>
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<height>76</height>
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</rect>
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</property>
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<layout class="QFormLayout" name="formLayout_5">
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<item row="0" column="0">
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<widget class="QLabel" name="label_4">
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<property name="text">
|
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<string>Min peak height</string>
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</property>
|
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</widget>
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</item>
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<item row="0" column="1">
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<widget class="QDoubleSpinBox" name="spin_min_peakheight">
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<property name="decimals">
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<number>6</number>
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</property>
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<property name="value">
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<double>0.000400000000000</double>
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</property>
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</widget>
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</item>
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<item row="1" column="0">
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<widget class="QLabel" name="label_6">
|
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<property name="text">
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<string>Min peak prominence</string>
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</property>
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</widget>
|
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</item>
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<item row="1" column="1">
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<widget class="QDoubleSpinBox" name="spin_min_peakprominence">
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<property name="decimals">
|
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<number>6</number>
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</property>
|
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<property name="value">
|
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<double>0.001200000000000</double>
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</property>
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</widget>
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</item>
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<item row="2" column="0">
|
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<widget class="QLabel" name="label_5">
|
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<property name="text">
|
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<string>Moving average size</string>
|
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</property>
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</widget>
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</item>
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<item row="2" column="1">
|
||||
<widget class="QSpinBox" name="spin_moving_average_denom">
|
||||
<property name="value">
|
||||
<number>20</number>
|
||||
</property>
|
||||
</widget>
|
||||
</item>
|
||||
</layout>
|
||||
</widget>
|
||||
</widget>
|
||||
</widget>
|
||||
<widget class="QMenuBar" name="menubar">
|
||||
<property name="geometry">
|
||||
|
|
@ -479,7 +529,7 @@
|
|||
<x>0</x>
|
||||
<y>0</y>
|
||||
<width>1091</width>
|
||||
<height>26</height>
|
||||
<height>21</height>
|
||||
</rect>
|
||||
</property>
|
||||
<widget class="QMenu" name="menuFile">
|
||||
|
|
|
|||
|
|
@ -41,6 +41,10 @@ class BaseGraph(QtWidgets.QWidget):
|
|||
self.canv.draw()
|
||||
print("attempted plot")
|
||||
|
||||
def clear(self):
|
||||
self.canv.axes.clear()
|
||||
self.canv.draw()
|
||||
|
||||
class RawDataGraph(BaseGraph):
|
||||
pass
|
||||
|
||||
|
|
|
|||
Loading…
Reference in New Issue