Add pybind11 interface

fixes-turtlebasket
Chris Richardson 2020-05-04 12:40:13 +01:00
parent 73a5aae3cd
commit 443f63120a
3 changed files with 214 additions and 0 deletions

2
python/build.sh Executable file
View File

@ -0,0 +1,2 @@
#!/bin/bash
g++ -Wall -fPIC -shared `python3 -m pybind11 --includes` -I../include -I/usr/include/eigen3 pyopenGJK.cpp ../src/openGJK.c -o opengjkc`python3-config --extension-suffix`

31
python/pyopenGJK.cpp Normal file
View File

@ -0,0 +1,31 @@
#include "openGJK/openGJK.h"
#include <pybind11/eigen.h>
#include <pybind11/pybind11.h>
namespace py = pybind11;
PYBIND11_MODULE(opengjkc, m)
{
m.def("gjk",
[](Eigen::Array<double, Eigen::Dynamic, 3, Eigen::RowMajor>& arr1,
Eigen::Array<double, Eigen::Dynamic, 3, Eigen::RowMajor>& arr2)
-> double {
struct simplex s;
struct bd bd1;
struct bd bd2;
bd1.numpoints = arr1.rows();
std::vector<double*> arr1_rows(arr1.rows());
for (int i = 0; i < arr1.rows(); ++i)
arr1_rows[i] = arr1.row(i).data();
bd1.coord = arr1_rows.data();
bd2.numpoints = arr2.rows();
std::vector<double*> arr2_rows(arr2.rows());
for (int i = 0; i < arr2.rows(); ++i)
arr2_rows[i] = arr2.row(i).data();
bd2.coord = arr2_rows.data();
double a = gjk(bd1, bd2, &s);
return a;
});
}

181
python/test.py Normal file
View File

@ -0,0 +1,181 @@
import opengjkc as opengjk
from scipy.spatial.transform import Rotation as R
import numpy as np
import pytest
def distance_point_to_line_3D(P1, P2, point):
"""
distance from point to line
"""
return np.linalg.norm(np.cross(P2-P1, P1-point))/np.linalg.norm(P2-P1)
def distance_point_to_plane_3D(P1, P2, P3, point):
"""
Distance from point to plane
"""
return np.abs(np.dot(np.cross(P2-P1, P3-P1) /
np.linalg.norm(np.cross(P2-P1, P3-P1)), point-P2))
@pytest.mark.parametrize("delta", [0.1, 1e-12, 0, -2])
def test_line_point_distance(delta):
line = np.array([[0.1, 0.2, 0.3], [0.5, 0.8, 0.7]], dtype=np.float64)
point_on_line = line[0] + 0.27*(line[1]-line[0])
normal = np.cross(line[0], line[1])
point = point_on_line + delta * normal
distance = opengjk.gjk(line, point)
actual_distance = distance_point_to_line_3D(
line[0], line[1], point)
print(distance, actual_distance)
assert(np.isclose(distance, actual_distance, atol=1e-15))
@pytest.mark.parametrize("delta", [0.1, 1e-12, 0])
def test_line_line_distance(delta):
line = np.array([[-0.5, -0.7, -0.3], [1, 2, 3]], dtype=np.float64)
point_on_line = line[0] + 0.38*(line[1]-line[0])
normal = np.cross(line[0], line[1])
point = point_on_line + delta * normal
line_2 = np.array([point, [2, 5, 6]], dtype=np.float64)
distance = opengjk.gjk(line, line_2)
actual_distance = distance_point_to_line_3D(
line[0], line[1], line_2[0])
print(distance, actual_distance)
assert(np.isclose(distance, actual_distance, atol=1e-15))
@pytest.mark.parametrize("delta", [0.1**(3*i) for i in range(6)])
def test_tri_distance(delta):
tri_1 = np.array([[0, 0, 0], [1, 0, 0], [0, 1, 0]], dtype=np.float64)
tri_2 = np.array([[1, delta, 0], [3, 1.2, 0], [
1, 1, 0]], dtype=np.float64)
P1 = tri_1[2]
P2 = tri_1[1]
point = tri_2[0]
actual_distance = distance_point_to_line_3D(P1, P2, point)
distance = opengjk.gjk(tri_1, tri_2)
print("Computed distance ", distance, "Actual distance ", actual_distance)
assert(np.isclose(distance, actual_distance, atol=1e-15))
@pytest.mark.parametrize("delta", [0.1*0.1**(3*i) for i in range(6)])
def test_quad_distance2d(delta):
quad_1 = np.array([[0, 0, 0], [1, 0, 0], [0, 1, 0],
[1, 1, 0]], dtype=np.float64)
quad_2 = np.array([[0, 1+delta, 0], [2, 2, 0],
[2, 4, 0], [4, 4, 0]], dtype=np.float64)
P1 = quad_1[2]
P2 = quad_1[3]
point = quad_2[0]
actual_distance = distance_point_to_line_3D(P1, P2, point)
distance = opengjk.gjk(quad_1, quad_2)
print("Computed distance ", distance, "Actual distance ", actual_distance)
assert(np.isclose(distance, actual_distance, atol=1e-15))
@pytest.mark.parametrize("delta", [1*0.5**(3*i) for i in range(7)])
def test_tetra_distance_3d(delta):
tetra_1 = np.array([[0, 0, 0.2], [1, 0, 0.1], [0, 1, 0.3],
[0, 0, 1]], dtype=np.float64)
tetra_2 = np.array([[0, 0, -3], [1, 0, -3], [0, 1, -3],
[0.5, 0.3, -delta]], dtype=np.float64)
actual_distance = distance_point_to_plane_3D(tetra_1[0], tetra_1[1],
tetra_1[2], tetra_2[3])
distance = opengjk.gjk(tetra_1, tetra_2)
print("Computed distance ", distance, "Actual distance ", actual_distance)
assert(np.isclose(distance, actual_distance, atol=1e-15))
@pytest.mark.parametrize("delta", [(-1)**i*np.sqrt(2)*0.1**(3*i)
for i in range(6)])
def test_tetra_collision_3d(delta):
tetra_1 = np.array([[0, 0, 0], [1, 0, 0], [0, 1, 0],
[0, 0, 1]], dtype=np.float64)
tetra_2 = np.array([[0, 0, -3], [1, 0, -3], [0, 1, -3],
[0.5, 0.3, -delta]], dtype=np.float64)
actual_distance = distance_point_to_plane_3D(tetra_1[0], tetra_1[1],
tetra_1[2], tetra_2[3])
distance = opengjk.gjk(tetra_1, tetra_2)
if delta < 0:
assert(np.isclose(distance, 0, atol=1e-15))
else:
print("Computed distance ", distance,
"Actual distance ", actual_distance)
assert(np.isclose(distance, actual_distance, atol=1e-15))
@pytest.mark.parametrize("delta", [0, -0.1, -0.49, -0.51])
def test_hex_collision_3d(delta):
hex_1 = np.array([[0, 0, 0], [1, 0, 0], [0, 1, 0], [1, 1, 0],
[0, 0, 1], [1, 0, 1], [0, 1, 1], [1, 1, 1]],
dtype=np.float64)
P0 = np.array([1.5+delta, 1.5+delta, 0.5], dtype=np.float64)
P1 = np.array([2, 2, 1], dtype=np.float64)
P2 = np.array([2, 1.25, 0.25], dtype=np.float64)
P3 = P1 + P2 - P0
quad_1 = np.array([P0, P1, P2, P3], dtype=np.float64)
n = (np.cross(quad_1[1]-quad_1[0], quad_1[2]-quad_1[0]) /
np.linalg.norm(
np.cross(quad_1[1]-quad_1[0],
quad_1[2]-quad_1[0])))
quad_2 = quad_1 + n
hex_2 = np.zeros((8, 3), dtype=np.float64)
hex_2[:4, :] = quad_1
hex_2[4:, :] = quad_2
actual_distance = np.linalg.norm(
np.array([1, 1, P0[2]], dtype=np.float64)-hex_2[0])
distance = opengjk.gjk(hex_1, hex_2)
if P0[0] < 1:
assert(np.isclose(distance, 0, atol=1e-15))
else:
print("Computed distance ", distance,
"Actual distance ", actual_distance)
assert(np.isclose(distance, actual_distance, atol=1e-15))
@pytest.mark.parametrize("c0", [0, 1, 2, 3])
@pytest.mark.parametrize("c1", [0, 1, 2, 3])
def test_cube_distance(c0, c1):
cubes = [np.array([[-1, -1, -1], [1, -1, -1], [-1, 1, -1], [1, 1, -1],
[-1, -1, 1], [1, -1, 1], [-1, 1, 1], [1, 1, 1]],
dtype=np.float64)]
r = R.from_euler('z', 45, degrees=True)
cubes.append(r.apply(cubes[0]))
r = R.from_euler('y', np.arctan2(1.0, np.sqrt(2)))
cubes.append(r.apply(cubes[1]))
r = R.from_euler('y', 45, degrees=True)
cubes.append(r.apply(cubes[0]))
dx = cubes[c0][:,0].max() - cubes[c1][:,0].min()
cube0 = cubes[c0]
for delta in [1e8, 1.0, 1e-4, 1e-8, 1e-12]:
cube1 = cubes[c1] + np.array([dx + delta, 0, 0])
distance = opengjk.gjk(cube0, cube1)
print(distance, delta)
assert(np.isclose(distance, delta))
def test_random_objects():
for i in range(1, 8):
for j in range(1, 8):
for k in range(1000):
arr1 = np.random.rand(i, 3)
arr2 = np.random.rand(j, 3)
opengjk.gjk(arr1, arr2)
def test_large_random_objects():
for i in range(1, 8):
for j in range(1, 8):
for k in range(1000):
arr1 = 10000.0*np.random.rand(i, 3)
arr2 = 10000.0*np.random.rand(j, 3)
opengjk.gjk(arr1, arr2)