diff --git a/CMakeLists.txt b/CMakeLists.txt
index 591e8be..bbb88e8 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -1,94 +1,84 @@
-# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - #
-# ##### # # # #
-# #### ##### ###### # # # # # # # #
-# # # # # # ## # # # # # #
-# # # # # ##### # # # # #### # ### #
-# # # ##### # # # # # # # # # # #
-# # # # # # ## # # # # # # #
-# #### # ###### # # ##### ##### # # #
-# #
-# This file is part of openGJK. #
-# #
-# openGJK is free software: you can redistribute it and/or modify #
-# it under the terms of the GNU General Public License as published by #
-# the Free Software Foundation, either version 3 of the License, or #
-# any later version. #
-# #
-# openGJK is distributed in the hope that it will be useful, #
-# but WITHOUT ANY WARRANTY; without even the implied warranty of #
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See The #
-# GNU General Public License for more details. #
-# #
-# You should have received a copy of the GNU General Public License #
-# along with Foobar. If not, see . #
-# #
-# openGJK: open-source Gilbert-Johnson-Keerthi algorithm #
-# Copyright (C) Mattia Montanari 2018 - 2019 #
-# http://iel.eng.ox.ac.uk/?page_id=504 #
-# #
-# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - #
-
-cmake_minimum_required(VERSION 3.5)
-project(openGJK)
-
-set(CMAKE_C_STANDARD 11)
-
-message("[${CMAKE_PROJECT_NAME}] Welcome, please change user options if needed.")
-
-# APPLY DEFAULT SETTINGS
-if(NOT CMAKE_BUILD_TYPE)
- message("[${CMAKE_PROJECT_NAME}] Use default CMAKE_BUILD_TYPE")
- set(CMAKE_BUILD_TYPE Release)
-endif()
-
-
-# PLATFORM-SPECIFIC SETTING
-if (UNIX)
- find_library(M_LIB m)
- set(CMAKE_C_FLAGS "-lm")
- set(CMAKE_CXX_FLAGS "-lm")
-else ()
- set(CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS ON)
-endif ()
-
-# COMPILER SETTING
-IF(CMAKE_BUILD_TYPE MATCHES Release)
- set(CMAKE_BUILD_TYPE Release)
-ELSEIF(CMAKE_BUILD_TYPE MATCHES Debug)
- set(CMAKE_BUILD_TYPE Debug)
-ENDIF()
-
-if ("${CMAKE_CXX_COMPILER_ID}" STREQUAL "GNU")
- # using GCC
- set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wextra -finline-functions")
- set(CMAKE_CXX_FLAGS_DEBUG "-g -DDEBUG")
- set(CMAKE_CXX_FLAGS_RELEASE "-O3")
-
- set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -Wextra -finline-functions")
- set(CMAKE_C_FLAGS_DEBUG "-g -DDEBUG")
- set(CMAKE_C_FLAGS_RELEASE "-O3")
-
- add_compile_options(-static-libgcc -static-libstdc++ )
- add_definitions(-DMT)
-elseif ("${CMAKE_CXX_COMPILER_ID}" STREQUAL "MSVC")
- # using Visual Studio C++
- set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} /wd4131 /wd4701 /wd4255 /wd4710 /wd4820 /wd4711 /wd5045")
- set(CMAKE_CXX_FLAGS_DEBUG "-DDEBUG /D_DEBUG /MDd /Zi /Ob0 /Od /RTC1")
- set(CMAKE_CXX_FLAGS_RELEASE "/Ox")
-
- set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} /wd4131 /wd4701 /wd4255 /wd4710 /wd4820 /wd4711 /wd5045")
- set(CMAKE_C_FLAGS_DEBUG "-DDEBUG /D_DEBUG /MDd /Zi /Ob0 /Od /RTC1")
- set(CMAKE_C_FLAGS_RELEASE "/Ox")
-
- set(CMAKE_SUPPRESS_REGENERATION true)
-
- endif()
-
-# DEBUG FLAGS
-IF(CMAKE_BUILD_TYPE MATCHES Debug)
- add_definitions(-DDEBUG)
-ENDIF()
-
-# INCLUDE LIBRARY AND EXAMPLE DIR
-add_subdirectory(lib)
-add_subdirectory(example1_c)
+# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - #
+# ##### # # # #
+# #### ##### ###### # # # # # # # #
+# # # # # # ## # # # # # #
+# # # # # ##### # # # # #### # ### #
+# # # ##### # # # # # # # # # # #
+# # # # # # ## # # # # # # #
+# #### # ###### # # ##### ##### # # #
+# #
+# This file is part of openGJK. #
+# #
+# openGJK is free software: you can redistribute it and/or modify #
+# it under the terms of the GNU General Public License as published by #
+# the Free Software Foundation, either version 3 of the License, or #
+# any later version. #
+# #
+# openGJK is distributed in the hope that it will be useful, #
+# but WITHOUT ANY WARRANTY; without even the implied warranty of #
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See The #
+# GNU General Public License for more details. #
+# #
+# You should have received a copy of the GNU General Public License #
+# along with openGJK. If not, see . #
+# #
+# openGJK: open-source Gilbert-Johnson-Keerthi algorithm #
+# Copyright (C) Mattia Montanari 2018 - 2019 #
+# http://iel.eng.ox.ac.uk/?page_id=504 #
+# #
+# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - #
+
+message( "[${PROJECT_NAME}] CMake setting ..")
+
+message(STATUS "Version : " ${openGJK_VERSION} )
+message(STATUS "Build type : " ${CMAKE_BUILD_TYPE} )
+
+# Select source files
+set( SOURCE_FILES src/openGJK.c )
+set( SOURCE_HEADS include/openGJK/openGJK.h)
+
+IF(USE_PREDICATES)
+ # for adpative floating-point artim.
+ set( SOURCE_FILES ${SOURCE_FILES} ext/predicates.c)
+ set( SOURCE_HEADS ${SOURCE_HEADS} ext/predicates.h)
+ # Add flag for adpative floating-point artim.
+ add_definitions(-DADAPTIVEFP)
+ENDIF()
+
+IF(BUILD_STATIC_LIB)
+ message(STATUS "Library type: " Static )
+ add_library(${PROJECT_NAME} STATIC ${SOURCE_FILES} ${SOURCE_HEADS})
+ add_definitions(-DCMAKE_WINDOWS_EXPORT_ALL_SYMBOLS=TRUE -DBUILD_SHARED_LIBS=FALSE)
+ELSE()
+ message(STATUS "Library type: " Shared )
+ add_library(${PROJECT_NAME} SHARED ${SOURCE_FILES} ${SOURCE_HEADS})
+ add_definitions(-DCMAKE_WINDOWS_EXPORT_ALL_SYMBOLS=TRUE -DBUILD_SHARED_LIBS=FALSE)
+ENDIF(BUILD_STATIC_LIB)
+
+# PLATFORM-SPECIFIC SETTING
+if (UNIX)
+ find_library(M_LIB m)
+ set(CMAKE_C_FLAGS "-lm")
+else ()
+ set(CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS ON)
+endif ()
+
+find_package(OpenMP)
+if (OPENMP_FOUND)
+ set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OpenMP_C_FLAGS}")
+ set (CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} ${OpenMP_EXE_LINKER_FLAGS}")
+endif()
+
+# ADD DEFAULT COMPILER FLAGS
+include(CompilerFlags)
+
+# Link include file
+target_include_directories( ${PROJECT_NAME} PUBLIC "${CMAKE_CURRENT_SOURCE_DIR}/include")
+ target_link_libraries(${PROJECT_NAME} ${CMOCKA_LIBRARY} OpenMP::OpenMP_C )
+
+IF(USE_PREDICATES)
+ # for adpative floating-point artim.
+ target_include_directories( ${PROJECT_NAME}
+ PUBLIC ${PROJECT_SOURCE_DIR}/ext
+ )
+ENDIF()
\ No newline at end of file
diff --git a/COPYING b/COPYING
index 94a9ed0..818433e 100644
--- a/COPYING
+++ b/COPYING
@@ -1,674 +1,674 @@
- GNU GENERAL PUBLIC LICENSE
- Version 3, 29 June 2007
-
- Copyright (C) 2007 Free Software Foundation, Inc.
- Everyone is permitted to copy and distribute verbatim copies
- of this license document, but changing it is not allowed.
-
- Preamble
-
- The GNU General Public License is a free, copyleft license for
-software and other kinds of works.
-
- The licenses for most software and other practical works are designed
-to take away your freedom to share and change the works. By contrast,
-the GNU General Public License is intended to guarantee your freedom to
-share and change all versions of a program--to make sure it remains free
-software for all its users. We, the Free Software Foundation, use the
-GNU General Public License for most of our software; it applies also to
-any other work released this way by its authors. You can apply it to
-your programs, too.
-
- When we speak of free software, we are referring to freedom, not
-price. Our General Public Licenses are designed to make sure that you
-have the freedom to distribute copies of free software (and charge for
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-you modify it: responsibilities to respect the freedom of others.
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- For example, if you distribute copies of such a program, whether
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- Developers that use the GNU GPL protect your rights with two steps:
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+ GNU GENERAL PUBLIC LICENSE
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+ All other non-permissive additional terms are considered "further
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+received it, or any part of it, contains a notice stating that it is
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+ A patent license is "discriminatory" if it does not include within
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+or that patent license was granted, prior to 28 March 2007.
+
+ Nothing in this License shall be construed as excluding or limiting
+any implied license or other defenses to infringement that may
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+
+ 12. No Surrender of Others' Freedom.
+
+ If conditions are imposed on you (whether by court order, agreement or
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+excuse you from the conditions of this License. If you cannot convey a
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+
+ 13. Use with the GNU Affero General Public License.
+
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+under version 3 of the GNU Affero General Public License into a single
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+combination as such.
+
+ 14. Revised Versions of this License.
+
+ The Free Software Foundation may publish revised and/or new versions of
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+be similar in spirit to the present version, but may differ in detail to
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+
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+
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+ 15. Disclaimer of Warranty.
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+ 16. Limitation of Liability.
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+ 17. Interpretation of Sections 15 and 16.
+
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+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
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+
+ How to Apply These Terms to Your New Programs
+
+ If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+ To do so, attach the following notices to the program. It is safest
+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+
+ Copyright (C)
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see .
+
+Also add information on how to contact you by electronic and paper mail.
+
+ If the program does terminal interaction, make it output a short
+notice like this when it starts in an interactive mode:
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+ This is free software, and you are welcome to redistribute it
+ under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License. Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+ You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+.
+
+ The GNU General Public License does not permit incorporating your program
+into proprietary programs. If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library. If this is what you want to do, use the GNU Lesser General
+Public License instead of this License. But first, please read
+.
diff --git a/INSTALL.md b/INSTALL.md
index c548903..8bf2815 100644
--- a/INSTALL.md
+++ b/INSTALL.md
@@ -1,151 +1,151 @@
-# How to compile openGJK
-
-Using openGJK is very simple. This guide will help you getting started compiling and using openGJK.
-
-## Requirements
-
-### Common requirements
-
-1. A C compiler
-2. [CMake](http://www.cmake.org) version 3.5 or above
-
-## Building
-First, you need to configure the compilation, using CMake.
-
-1. Go inside the `build` dir. Create it if it doesn't exist.
-2. Move into `build` dir and use `cmake ..`. On Windows you can specify `cmake -G "Visual Studio 15 2017 Win64" ..`, on Unix `cmake -G "Unix Makefiles" ..`.
-
-### CMake standard options
-
-- CMAKE_BUILD_TYPE: The type of build (can be Debug or Release)
-- CMAKE_C_COMPILER: The path to the C compiler
-
-### CMake options defined for openGJK
-
-Options are defined in the following files:
-
-- CmakeOptions.cmake
-
-They can be changed with the -D option:
-
-`cmake -DVERSION_ACCURATE=ON ..`
-
-In addition to passing options on the command line, you can browse and edit
-CMake options using `cmakesetup` (Windows), `cmake-gui` or `ccmake` (GNU/Linux
-and MacOS X).
-
-- Go to the build dir
-- On Windows: run `cmakesetup`
-- On GNU/Linux and MacOS X: run `ccmake ..`
-
-### Install and run
-
-If all above building commands were executed from `build`, the openGJK library can be found in the `build/src` directory.
-You can run the binaries in `build/examples/*`.
-
-To install the library copy the header file openGJK.h and the binaries in a folder accessible in the search path by all users (on Unix this would normally be /usr/local).
-
-## Testing
-
- TO REWRITE!!
-
-As mention above you can turn on the unit tests and make it possible to easily
-execute them:
-
-`cmake -DCMAKE_BUILD_TYPE=Debug -DUNIT_TESTING=ON ..`
-
-After that you can simply call `make test` in the build directory or if you
-want more output simply call `ctest -V`.
-
-If you want to enable the generation of coverage files you can do this by
-using the following options:
-
-`cmake -DCMAKE_BUILD_TYPE=Profiling -DUNIT_TESTING=ON ..`
-
-After building it you will see that you have several coverage options in
-
-`make help`
-
-You should have `make ExperimentalCoverage` and running it will create
-coverage files. The result is stored in Testing directory.
-
-## Examples
-
-
-This section presents three examples on how to use openGJK with C, C# and Matlab.
-
-### C
-This example illustrates how to include openGJK in an existing C
- program.
-
-All files for the example are in the `example1_c` folder. The executable built with
- CMake reads the coordinates of two polytopes from the input files,
- respectively userP.dat and userQ.dat, and computes the minimum distance
- between them.
-
-Notice that the input files must be in the folder from which the executable
- is launched, otherwise an error is returned.
-
-You can edit the coordinates in the input file to test different
- polytopes; just remember to edit also the first number in the files
- that corresponds to the numbers of vertices that the program will read.
-
-### Matlab
-This example illustrates how to invoke openGJK as a regular built-in
- Matlab function. You will need to build mex files (find out the requisites from [Mathworks documentation](https://uk.mathworks.com/help/matlab/matlab_external/what-you-need-to-build-mex-files.html)).
-
-
-Open Matlab and cd into the `example2_mex` folder. By running the
- script `runme.m`, Matlab will first compile a mex file (telling you
- about the name of the mex file generated) and will call the script
- `main.m`. This invokes openGJK within Matlab and illustrates the
- result.
-
-The mex file may be copied and called from any other Matlab project.
-
-### C# #
-This example illustrates how to invoke openGJK in an applications written in C#. You will need [mono](http://www.mono-project.com/) and Microsoft Visual Studio toolchain for C# on Windows.
-
-The only file required is in the `example3_csharp` folder. This can be compiled in Unix
- with mono, or in Windows using Visual Studio. Notice that, however, the openGJK library
- is compiled for a specific architecture (usually x64), and this breaks the portability
- of the .NET application compiled in this example.
-
-Below are the steps for compiling the C# application on Windows and Linux. Both
- procedures assume the dynamic library of openGJK has been already compiled.
-
-#### Compile on Windows
- 1. Move into the folder `example3_csharp` and create a new folder `example3`.
- 2. Copy into this folder the openGJK library or make it available in any directory.
- 3. Open Visual Studio and create a new project. As project type select **Console App (.NET Framework)**.
- 4. Add to this project the `main.cs` file
- 5. Set x64 as the target platform, compile the application and run it.
-
-
-#### Compile on Linux
- 1. Move into the folder `example3_csharp` and create a new folder `example3`.
- 2. Copy into this folder the openGJK library or install is so that is available in any directory.
- 3. Move into that new folder and open a terminal.
- 4. Type `mcs -out:example3demo -d:UNIX ../main.cs`
- 5. Run the example by typing `mono example3demo`
-
-## API user reference
-
-```double gjk( struct bodyA, struct bodyB, struct simplex)```
-
-### Documentation
-The folder `doc` contains a Doxygen file for generating the documentation of the whole
- library. To build the documentation cd into `doc` and call Doxygen from the command line simply by typing `doxygen`. If correctly installed, Doxygen will create html documentation with graphs illustrating the call stack of the functions of the library.
-
-### Parameters
-* **bodyA** The first body.
-* **bodyB** The second body.
-* **simplex** The simplex used the GJK algorithm at the first iteration.
-
-### Returns
-* **double** the minimum distance between bodyA and bodyB.
-
-### Description
-The function `gjk` computes the minimum Euclidean distance between two bodies using the
- GJK algorithm. Note that the simplex used at the first iteration may be initialised by the user, but this is not necessary.
+# How to compile openGJK
+
+Using openGJK is very simple. This guide will help you getting started compiling and using openGJK.
+
+## Requirements
+
+### Common requirements
+
+1. A C compiler
+2. [CMake](http://www.cmake.org) version 3.5 or above
+
+## Building
+First, you need to configure the compilation, using CMake.
+
+1. Go inside the `build` dir. Create it if it doesn't exist.
+2. Move into `build` dir and use `cmake ..`. On Windows you can specify `cmake -G "Visual Studio 15 2017 Win64" ..`, on Unix `cmake -G "Unix Makefiles" ..`.
+
+### CMake standard options
+
+- CMAKE_BUILD_TYPE: The type of build (can be Debug or Release)
+- CMAKE_C_COMPILER: The path to the C compiler
+
+### CMake options defined for openGJK
+
+Options are defined in the following files:
+
+- CmakeOptions.cmake
+
+They can be changed with the -D option:
+
+`cmake -DVERSION_ACCURATE=ON ..`
+
+In addition to passing options on the command line, you can browse and edit
+CMake options using `cmakesetup` (Windows), `cmake-gui` or `ccmake` (GNU/Linux
+and MacOS X).
+
+- Go to the build dir
+- On Windows: run `cmakesetup`
+- On GNU/Linux and MacOS X: run `ccmake ..`
+
+### Install and run
+
+If all above building commands were executed from `build`, the openGJK library can be found in the `build/src` directory.
+You can run the binaries in `build/examples/*`.
+
+To install the library copy the header file openGJK.h and the binaries in a folder accessible in the search path by all users (on Unix this would normally be /usr/local).
+
+## Testing
+
+ TO REWRITE!!
+
+As mention above you can turn on the unit tests and make it possible to easily
+execute them:
+
+`cmake -DCMAKE_BUILD_TYPE=Debug -DUNIT_TESTING=ON ..`
+
+After that you can simply call `make test` in the build directory or if you
+want more output simply call `ctest -V`.
+
+If you want to enable the generation of coverage files you can do this by
+using the following options:
+
+`cmake -DCMAKE_BUILD_TYPE=Profiling -DUNIT_TESTING=ON ..`
+
+After building it you will see that you have several coverage options in
+
+`make help`
+
+You should have `make ExperimentalCoverage` and running it will create
+coverage files. The result is stored in Testing directory.
+
+## Examples
+
+
+This section presents three examples on how to use openGJK with C, C# and Matlab.
+
+### C
+This example illustrates how to include openGJK in an existing C
+ program.
+
+All files for the example are in the `example1_c` folder. The executable built with
+ CMake reads the coordinates of two polytopes from the input files,
+ respectively userP.dat and userQ.dat, and computes the minimum distance
+ between them.
+
+Notice that the input files must be in the folder from which the executable
+ is launched, otherwise an error is returned.
+
+You can edit the coordinates in the input file to test different
+ polytopes; just remember to edit also the first number in the files
+ that corresponds to the numbers of vertices that the program will read.
+
+### Matlab
+This example illustrates how to invoke openGJK as a regular built-in
+ Matlab function. You will need to build mex files (find out the requisites from [Mathworks documentation](https://uk.mathworks.com/help/matlab/matlab_external/what-you-need-to-build-mex-files.html)).
+
+
+Open Matlab and cd into the `example2_mex` folder. By running the
+ script `runme.m`, Matlab will first compile a mex file (telling you
+ about the name of the mex file generated) and will call the script
+ `main.m`. This invokes openGJK within Matlab and illustrates the
+ result.
+
+The mex file may be copied and called from any other Matlab project.
+
+### C# #
+This example illustrates how to invoke openGJK in an applications written in C#. You will need [mono](http://www.mono-project.com/) and Microsoft Visual Studio toolchain for C# on Windows.
+
+The only file required is in the `example3_csharp` folder. This can be compiled in Unix
+ with mono, or in Windows using Visual Studio. Notice that, however, the openGJK library
+ is compiled for a specific architecture (usually x64), and this breaks the portability
+ of the .NET application compiled in this example.
+
+Below are the steps for compiling the C# application on Windows and Linux. Both
+ procedures assume the dynamic library of openGJK has been already compiled.
+
+#### Compile on Windows
+ 1. Move into the folder `example3_csharp` and create a new folder `example3`.
+ 2. Copy into this folder the openGJK library or make it available in any directory.
+ 3. Open Visual Studio and create a new project. As project type select **Console App (.NET Framework)**.
+ 4. Add to this project the `main.cs` file
+ 5. Set x64 as the target platform, compile the application and run it.
+
+
+#### Compile on Linux
+ 1. Move into the folder `example3_csharp` and create a new folder `example3`.
+ 2. Copy into this folder the openGJK library or install is so that is available in any directory.
+ 3. Move into that new folder and open a terminal.
+ 4. Type `mcs -out:example3demo -d:UNIX ../main.cs`
+ 5. Run the example by typing `mono example3demo`
+
+## API user reference
+
+```double gjk( struct bodyA, struct bodyB, struct simplex)```
+
+### Documentation
+The folder `doc` contains a Doxygen file for generating the documentation of the whole
+ library. To build the documentation cd into `doc` and call Doxygen from the command line simply by typing `doxygen`. If correctly installed, Doxygen will create html documentation with graphs illustrating the call stack of the functions of the library.
+
+### Parameters
+* **bodyA** The first body.
+* **bodyB** The second body.
+* **simplex** The simplex used the GJK algorithm at the first iteration.
+
+### Returns
+* **double** the minimum distance between bodyA and bodyB.
+
+### Description
+The function `gjk` computes the minimum Euclidean distance between two bodies using the
+ GJK algorithm. Note that the simplex used at the first iteration may be initialised by the user, but this is not necessary.
\ No newline at end of file
diff --git a/LICENSE b/LICENSE
index 94a9ed0..818433e 100644
--- a/LICENSE
+++ b/LICENSE
@@ -1,674 +1,674 @@
- GNU GENERAL PUBLIC LICENSE
- Version 3, 29 June 2007
-
- Copyright (C) 2007 Free Software Foundation, Inc.
- Everyone is permitted to copy and distribute verbatim copies
- of this license document, but changing it is not allowed.
-
- Preamble
-
- The GNU General Public License is a free, copyleft license for
-software and other kinds of works.
-
- The licenses for most software and other practical works are designed
-to take away your freedom to share and change the works. By contrast,
-the GNU General Public License is intended to guarantee your freedom to
-share and change all versions of a program--to make sure it remains free
-software for all its users. We, the Free Software Foundation, use the
-GNU General Public License for most of our software; it applies also to
-any other work released this way by its authors. You can apply it to
-your programs, too.
-
- When we speak of free software, we are referring to freedom, not
-price. Our General Public Licenses are designed to make sure that you
-have the freedom to distribute copies of free software (and charge for
-them if you wish), that you receive source code or can get it if you
-want it, that you can change the software or use pieces of it in new
-free programs, and that you know you can do these things.
-
- To protect your rights, we need to prevent others from denying you
-these rights or asking you to surrender the rights. Therefore, you have
-certain responsibilities if you distribute copies of the software, or if
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+ GNU GENERAL PUBLIC LICENSE
+ Version 3, 29 June 2007
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+ Copyright (C) 2007 Free Software Foundation, Inc.
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+THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
+GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
+USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
+DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
+PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
+EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
+SUCH DAMAGES.
+
+ 17. Interpretation of Sections 15 and 16.
+
+ If the disclaimer of warranty and limitation of liability provided
+above cannot be given local legal effect according to their terms,
+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+ END OF TERMS AND CONDITIONS
+
+ How to Apply These Terms to Your New Programs
+
+ If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+ To do so, attach the following notices to the program. It is safest
+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+
+ Copyright (C)
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see .
+
+Also add information on how to contact you by electronic and paper mail.
+
+ If the program does terminal interaction, make it output a short
+notice like this when it starts in an interactive mode:
+
+ Copyright (C)
+ This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+ This is free software, and you are welcome to redistribute it
+ under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License. Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+ You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+.
+
+ The GNU General Public License does not permit incorporating your program
+into proprietary programs. If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library. If this is what you want to do, use the GNU Lesser General
+Public License instead of this License. But first, please read
+.
diff --git a/README.md b/README.md
index 7889209..74845bb 100644
--- a/README.md
+++ b/README.md
@@ -1,230 +1,95 @@
-
-openGJK {#mainpage}
-=======
-
-The openGJK library uses the Gilbert-Johnson-Keerthi (GJK) algorithm to
- compute the minimum distance between convex polytopes. The
- implementation follows the description presented in
- "[Improving the GJK Algorithm for Faster and More Reliable Distance
- Queries Between Convex Objects. ACM Trans. on Graph. 2017](https://dl.acm.org/citation.cfm?id=3083724)" and has been tested
- on Unix and Windows systems for C, C# and Matlab programs.
-
-This library offers researchers a tool that works
- out of the box: you can import it in your program and use it to measure
- the distance between two convex polytopes in 3D. All it needs are the
- coordinates of the vertices describing the two bodies.
- This library is not optimised for production, but it does provide a comprehensive and robust implementation. It is sufficiently fast for
- most applications, and you can also build from here to suite your own
- application. For instance, openGJK is not for incremental and is not
- for NURBS, but it offers a good starting point for such specific
- applications.
-
-## Getting Started
-Using openGJK is very simple. This guide will help you getting
- started compiling and using openGJK.
-
-### When should I use openGJK?
-
-OpenGJK is designed with accuracy and robustness in mind and is
- suitable for engineering simulations. Good use of this library
- include the finite element method (FEM) and discrete element method (DEM).
-
-Basically, openGJK can measure the distance between **any convex polytope**. For example:
-- line segments
-- triangles
-- tetrahedrons
-- cubes.
-
-### Installing the openGJK library
-
-#### Prerequisites
-
-1. A compiler (gnu or Microsoft Visual Studio for C)
-2. CMake version 3.5 or above
-3. Only for the Matlab interface you will need to build mex files (find out the requisites from [Mathworks documentation](https://uk.mathworks.com/help/matlab/matlab_external/what-you-need-to-build-mex-files.html)).
-4. Only for the C# interface on Unix you will need [mono](http://www.mono-project.com/) and Microsoft Visual Studio toolchain for C# on Windows.
-
-### Installation
-
-There are CMake files for compiling openGJK in the usual
- way:
- 1. Create a new folder in the folder containing this readme file.
- 2. Move into that folder and type `cmake -G ..`. For example,
- on Windows you can type `cmake -G "Visual Studio 15 2017 Win64" ..`, on Unix `cmake -G "Unix Makefiles" ..`.
- 3. Use the files generated by Cmake to build the library. Whether you compile
- with `make` or an IDE, you will build a shared library and an executable
- for the C example. For Matlab and C# applications, see sections below.
-
-To install the library you should copy the header file openGJK.h and the binaries in a folder accessible in the search path by all users (on Unix this would normally be /usr/local).
-
-### Automated documentation
-The folder `doc` contains a Doxygen file for generating the documentation of the whole
- library. To build the documentation cd into `doc` and call Doxygen from the command line simply by typing `doxygen`. If correctly installed, Doxygen will create html documentation with graphs illustrating the call stack of the functions of the library.
-
-## API user reference
-
-```double gjk( struct bodyA, struct bodyB, struct simplex)```
-
-### Parameters
-* **bodyA** The first body.
-* **bodyB** The second body.
-* **simplex** The simplex used the GJK algorithm at the first iteration.
-
-### Returns
-* **double** the minimum distance between bodyA and bodyB.
-
-### Description
-The function `gjk` computes the minimum Euclidean distance between two bodies using the
- GJK algorithm. Note that the simplex used at the first iteration may be initialised by the user, but this is not necessary.
-
-
-## Configuration
-
-openGJK comes in two flavours: *accurate* and *fast* (default). You can
- change before compiling by editing the main 'lib\CMakeLists.txt' file
- (in the folder `lib`). Set the option `VERSION_ACCURATE` to `ON` and
- run CMake. You can verify what version is being compiled from the terminal,
- if you do not see "Version: Accurate" when calling CMake, you have to clean
- the CMake cache.
-
-## Examples
-
-This section presents three examples on how to use openGJK with C, C# and Matlab.
- All the examples have been tested both Linux and Windows; the former used `make` and `gcc`,
- the latter using `Visual studio 2017` and its compiler. Only x64 systems have been tested.
-
-### C
-This example illustrates how to include openGJK in an existing C
- program.
-
-All files for the example are in the `example1_c` folder. The executable built with
- CMake reads the coordinates of two polytopes from the input files,
- respectively userP.dat and userQ.dat, and computes the minimum distance
- between them.
-
-Notice that the input files must be in the folder from which the executable
- is launched, otherwise an error is returned.
-
-You can edit the coordinates in the input file to test different
- polytopes; just remember to edit also the first number in the files
- that corresponds to the numbers of vertices that the program will read.
-
-### Matlab
-This example illustrates how to invoke openGJK as a regular built-in
- Matlab function.
-
-Open Matlab and cd into the `example2_mex` folder. By running the
- script `runme.m`, Matlab will first compile a mex file (telling you
- about the name of the mex file generated) and will call the script
- `main.m`. This invokes openGJK within Matlab and illustrates the
- result.
-
-The mex file may be copied and called from any other Matlab project.
-
-### C# #
-This example illustrates how to invoke openGJK in an applications written in C#.
- The only file required is in the `example3_csharp` folder. This can be compiled in Unix
- with mono, or in Windows using Visual Studio. Notice that, however, the openGJK library
- is compiled for a specific architecture (usually x64), and this breaks the portability
- of the .NET application compiled in this example.
-
-Below are the steps for compiling the C# application on Windows and Linux. Both
- procedures assume the dynamic library of openGJK has been already compiled.
-
-#### Compile on Windows
- 1. Move into the folder `example3_csharp` and create a new folder `example3`.
- 2. Copy into this folder the openGJK library or make it available in any directory.
- 3. Open Visual Studio and create a new project. As project type select **Console App (.NET Framework)**.
- 4. Add to this project the `main.cs` file
- 5. Set x64 as the target platform, compile the application and run it.
-
-
-#### Compile on Linux
- 1. Move into the folder `example3_csharp` and create a new folder `example3`.
- 2. Copy into this folder the openGJK library or install is so that is available in any directory.
- 3. Move into that new folder and open a terminal.
- 4. Type `mcs -out:example3demo -d:UNIX ../main.cs`
- 5. Run the example by typing `mono example3demo`
-
-
-
-
-## Repository content
-This repository contains the following files and folders:
-
-```
-│ CMakeLists.txt
-│ README.md
-│
-├───doc
-│ openGJKcustomfooter.html
-│ openGJKcustomheader.html
-│ openGJKcustomstyle.css
-│ Doxyfile
-│ oxfordLogo.jpg
-│
-├───example1_c
-│ CMakeLists.txt
-│ main.c
-│ userP.dat
-│ userQ.dat
-│
-├───example2_mex
-│ main.m
-│ runme.m
-│
-├───example3_csharp
-│ main.cs
-│
-└───lib
- │ CMakeLists.txt
- │
- ├───ext
- │ predicates.c
- │ predicates.h
- │
- ├───include
- │ └───openGJK
- │ openGJK.h
- │
- └───src
- openGJK.c
-```
-
-## Where to go next?
-
-A clear presentation of the GJK algorithm can be found in the
- book by **Van der Bergen** *Collision Detection in Interactive 3D
- Environments*, edited by Elsevier.
-
-More details about the GJK algorithm can be found in the original paper
- from Gilbert, Johnson and Keerthi [A fast procedure for computing the distance between complex objects in three-dimensional space](http://ieeexplore.ieee.org/document/2083/?arnumber=2083).
-
-OpenGJK implements the GJK algorithm as described in: [Improving the GJK Algorithm for Faster and More Reliable Distance
- Queries Between Convex Objects. ACM Trans. on Graph. 2017 ](https://dl.acm.org/citation.cfm?id=3083724). Refer to this papar for further details on the method.
-
-
-
-## Licence
-
-This open-source edition of openGJK is released under the terms of
-[CC BY-NC-SA 4.0](https://creativecommons.org/licenses/by-nc-sa/4.0/) License.
- This means that any software created with this library you must comply
- with the terms of this licence. If you are seeking another licence please
- contact the author at the address at the end of this file.
-
-openGJK may use the geometric predicates from *Routines for Arbitrary
- Precision Floating-point Arithmetic*, by Jonathan Richard Shewchuk,
- whose source code is included in the file predicates.c of this
- repository for convenience.
-
-------------------------------------------------------------------------
- openGJK, Copyright (c) 2018
-
- Impact Engineering Laboratory
- Department of Engineering Science
- University of Oxford
- Parks Road, Oxford, OX1 3PJ
-
- mattia.montanari@eng.ox.ac.uk
-------------------------------------------------------------------------
+
+openGJK {#mainpage}
+=======
+
+OpenGJK implements a new version of the Gilbert-Johnson-Keerthi (GJK) algorithm to
+ compute the minimum distance between convex polytopes. OpenGJK is a C library which was tested on Unix and Windows using different compilers for multi-threaded applications.
+
+Detailed information about the algorithm see "[Improving the GJK Algorithm for Faster and More Reliable Distance
+ Queries Between Convex Objects. ACM Trans. on Graph. 2017](https://dl.acm.org/citation.cfm?id=3083724)".
+
+
+When should I use openGJK?
+--------------------------
+
+OpenGJK is designed with speed, accuracy and robustness in mind and is therefore suitable for engineering, robotics and computer graphics simulations.
+Basically, openGJK can be used in any application where the distance between **any convex polytope** is required.
+
+Compile and run
+---------------
+
+To compile the OpenGJK library create a build dir,
+and in the build dir call 'cmake ..' followed by 'make'. More details can be found in the INSTALL file.
+
+There are examples for C, C# and Matlab in the `examples` folder. The INSTALL file provides information on how to run the examples.
+
+Repository content
+------------------
+
+This repository contains the following files and folders:
+
+```
+│ CMakeLists.txt
+│ README.md
+│
+├───doc
+│ openGJKcustomfooter.html
+│ openGJKcustomheader.html
+│ openGJKcustomstyle.css
+│ Doxyfile
+│ oxfordLogo.jpg
+│
+├───example1_c
+│ CMakeLists.txt
+│ main.c
+│ userP.dat
+│ userQ.dat
+│
+├───example2_mex
+│ main.m
+│ runme.m
+│
+├───example3_csharp
+│ main.cs
+│
+└───lib
+ │ CMakeLists.txt
+ │
+ ├───ext
+ │ predicates.c
+ │ predicates.h
+ │
+ ├───include
+ │ └───openGJK
+ │ openGJK.h
+ │
+ └───src
+ openGJK.c
+```
+
+More information
+----------------
+
+[OpenGJK](http://iel.eng.ox.ac.uk/?page_id=504) was developed at the Impact Engineering Laboratory, University of Oxford.
+
+
+A clear presentation of the GJK algorithm can be found in the
+ book by **Van der Bergen** *Collision Detection in Interactive 3D
+ Environments*, edited by Elsevier.
+
+More details about the GJK algorithm can be found in the original paper
+ from Gilbert, Johnson and Keerthi [A fast procedure for computing the distance between complex objects in three-dimensional space](http://ieeexplore.ieee.org/document/2083/?arnumber=2083).
+
+
+How to cite openGJK
+-------------------
+
+If you use openGJK for your research please cite [OpenGJK for C, C# and Matlab: Reliable solutions to distance queries between convex bodies in three-dimensional space. SoftwareX. 2018](https://www.sciencedirect.com/science/article/pii/S2352711018300591).
+
+License
+-------
+
+This project is licensed undert the GNU General Public License v3.0.
+openGJK: open-source Gilbert-Johnson-Keerthi algorithm
+ Copyright (C) Mattia Montanari 2018 - 2019
+ http://iel.eng.ox.ac.uk/?page_id=504
\ No newline at end of file
diff --git a/doc/Doxyfile b/doc/Doxyfile
deleted file mode 100644
index 582a2b4..0000000
--- a/doc/Doxyfile
+++ /dev/null
@@ -1,2491 +0,0 @@
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-# ##### # # # #
-# #### ##### ###### # # # # # # # #
-# # # # # # ## # # # # # #
-# # # # # ##### # # # # #### # ### #
-# # # ##### # # # # # # # # # # #
-# # # # # # ## # # # # # # #
-# #### # ###### # # ##### ##### # # #
-# #
-# This file is part of openGJK. #
-# #
-# openGJK is free software: you can redistribute it and/or modify #
-# it under the terms of the GNU General Public License as published by #
-# the Free Software Foundation, either version 3 of the License, or #
-# any later version. #
-# #
-# openGJK is distributed in the hope that it will be useful, #
-# but WITHOUT ANY WARRANTY; without even the implied warranty of #
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See The #
-# GNU General Public License for more details. #
-# #
-# You should have received a copy of the GNU General Public License #
-# along with Foobar. If not, see . #
-# #
-# openGJK: open-source Gilbert-Johnson-Keerthi algorithm #
-# Copyright (C) Mattia Montanari 2018 - 2019 #
-# http://iel.eng.ox.ac.uk/?page_id=504 #
-# #
-# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - #
-
-#---------------------------------------------------------------------------
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-#---------------------------------------------------------------------------
-
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-# The default value is: UTF-8.
-
-DOXYFILE_ENCODING = UTF-8
-
-# The PROJECT_NAME tag is a single word (or a sequence of words surrounded by
-# double-quotes, unless you are using Doxywizard) that should identify the
-# project for which the documentation is generated. This name is used in the
-# title of most generated pages and in a few other places.
-# The default value is: My Project.
-
-PROJECT_NAME = openGJK
-
-# The PROJECT_NUMBER tag can be used to enter a project or revision number. This
-# could be handy for archiving the generated documentation or if some version
-# control system is used.
-
-PROJECT_NUMBER = 1.0
-
-# Using the PROJECT_BRIEF tag one can provide an optional one line description
-# for a project that appears at the top of each page and should give viewer a
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-PROJECT_BRIEF = "Fast and reliable distance queries in 3D"
-
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-SEPARATE_MEMBER_PAGES = NO
-
-# The TAB_SIZE tag can be used to set the number of spaces in a tab. Doxygen
-# uses this value to replace tabs by spaces in code fragments.
-# Minimum value: 1, maximum value: 16, default value: 4.
-
-TAB_SIZE = 4
-
-# This tag can be used to specify a number of aliases that act as commands in
-# the documentation. An alias has the form:
-# name=value
-# For example adding
-# "sideeffect=@par Side Effects:\n"
-# will allow you to put the command \sideeffect (or @sideeffect) in the
-# documentation, which will result in a user-defined paragraph with heading
-# "Side Effects:". You can put \n's in the value part of an alias to insert
-# newlines.
-
-ALIASES =
-
-# This tag can be used to specify a number of word-keyword mappings (TCL only).
-# A mapping has the form "name=value". For example adding "class=itcl::class"
-# will allow you to use the command class in the itcl::class meaning.
-
-TCL_SUBST =
-
-# Set the OPTIMIZE_OUTPUT_FOR_C tag to YES if your project consists of C sources
-# only. Doxygen will then generate output that is more tailored for C. For
-# instance, some of the names that are used will be different. The list of all
-# members will be omitted, etc.
-# The default value is: NO.
-
-OPTIMIZE_OUTPUT_FOR_C = YES
-
-# Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java or
-# Python sources only. Doxygen will then generate output that is more tailored
-# for that language. For instance, namespaces will be presented as packages,
-# qualified scopes will look different, etc.
-# The default value is: NO.
-
-OPTIMIZE_OUTPUT_JAVA = NO
-
-# Set the OPTIMIZE_FOR_FORTRAN tag to YES if your project consists of Fortran
-# sources. Doxygen will then generate output that is tailored for Fortran.
-# The default value is: NO.
-
-OPTIMIZE_FOR_FORTRAN = NO
-
-# Set the OPTIMIZE_OUTPUT_VHDL tag to YES if your project consists of VHDL
-# sources. Doxygen will then generate output that is tailored for VHDL.
-# The default value is: NO.
-
-OPTIMIZE_OUTPUT_VHDL = NO
-
-# Doxygen selects the parser to use depending on the extension of the files it
-# parses. With this tag you can assign which parser to use for a given
-# extension. Doxygen has a built-in mapping, but you can override or extend it
-# using this tag. The format is ext=language, where ext is a file extension, and
-# language is one of the parsers supported by doxygen: IDL, Java, Javascript,
-# C#, C, C++, D, PHP, Objective-C, Python, Fortran (fixed format Fortran:
-# FortranFixed, free formatted Fortran: FortranFree, unknown formatted Fortran:
-# Fortran. In the later case the parser tries to guess whether the code is fixed
-# or free formatted code, this is the default for Fortran type files), VHDL. For
-# instance to make doxygen treat .inc files as Fortran files (default is PHP),
-# and .f files as C (default is Fortran), use: inc=Fortran f=C.
-#
-# Note: For files without extension you can use no_extension as a placeholder.
-#
-# Note that for custom extensions you also need to set FILE_PATTERNS otherwise
-# the files are not read by doxygen.
-
-EXTENSION_MAPPING =
-
-# If the MARKDOWN_SUPPORT tag is enabled then doxygen pre-processes all comments
-# according to the Markdown format, which allows for more readable
-# documentation. See http://daringfireball.net/projects/markdown/ for details.
-# The output of markdown processing is further processed by doxygen, so you can
-# mix doxygen, HTML, and XML commands with Markdown formatting. Disable only in
-# case of backward compatibilities issues.
-# The default value is: YES.
-
-MARKDOWN_SUPPORT = YES
-
-# When the TOC_INCLUDE_HEADINGS tag is set to a non-zero value, all headings up
-# to that level are automatically included in the table of contents, even if
-# they do not have an id attribute.
-# Note: This feature currently applies only to Markdown headings.
-# Minimum value: 0, maximum value: 99, default value: 0.
-# This tag requires that the tag MARKDOWN_SUPPORT is set to YES.
-
-TOC_INCLUDE_HEADINGS = 0
-
-# When enabled doxygen tries to link words that correspond to documented
-# classes, or namespaces to their corresponding documentation. Such a link can
-# be prevented in individual cases by putting a % sign in front of the word or
-# globally by setting AUTOLINK_SUPPORT to NO.
-# The default value is: YES.
-
-AUTOLINK_SUPPORT = YES
-
-# If you use STL classes (i.e. std::string, std::vector, etc.) but do not want
-# to include (a tag file for) the STL sources as input, then you should set this
-# tag to YES in order to let doxygen match functions declarations and
-# definitions whose arguments contain STL classes (e.g. func(std::string);
-# versus func(std::string) {}). This also make the inheritance and collaboration
-# diagrams that involve STL classes more complete and accurate.
-# The default value is: NO.
-
-BUILTIN_STL_SUPPORT = NO
-
-# If you use Microsoft's C++/CLI language, you should set this option to YES to
-# enable parsing support.
-# The default value is: NO.
-
-CPP_CLI_SUPPORT = NO
-
-# Set the SIP_SUPPORT tag to YES if your project consists of sip (see:
-# https://www.riverbankcomputing.com/software/sip/intro) sources only. Doxygen
-# will parse them like normal C++ but will assume all classes use public instead
-# of private inheritance when no explicit protection keyword is present.
-# The default value is: NO.
-
-SIP_SUPPORT = NO
-
-# For Microsoft's IDL there are propget and propput attributes to indicate
-# getter and setter methods for a property. Setting this option to YES will make
-# doxygen to replace the get and set methods by a property in the documentation.
-# This will only work if the methods are indeed getting or setting a simple
-# type. If this is not the case, or you want to show the methods anyway, you
-# should set this option to NO.
-# The default value is: YES.
-
-IDL_PROPERTY_SUPPORT = YES
-
-# If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC
-# tag is set to YES then doxygen will reuse the documentation of the first
-# member in the group (if any) for the other members of the group. By default
-# all members of a group must be documented explicitly.
-# The default value is: NO.
-
-DISTRIBUTE_GROUP_DOC = NO
-
-# If one adds a struct or class to a group and this option is enabled, then also
-# any nested class or struct is added to the same group. By default this option
-# is disabled and one has to add nested compounds explicitly via \ingroup.
-# The default value is: NO.
-
-GROUP_NESTED_COMPOUNDS = NO
-
-# Set the SUBGROUPING tag to YES to allow class member groups of the same type
-# (for instance a group of public functions) to be put as a subgroup of that
-# type (e.g. under the Public Functions section). Set it to NO to prevent
-# subgrouping. Alternatively, this can be done per class using the
-# \nosubgrouping command.
-# The default value is: YES.
-
-SUBGROUPING = YES
-
-# When the INLINE_GROUPED_CLASSES tag is set to YES, classes, structs and unions
-# are shown inside the group in which they are included (e.g. using \ingroup)
-# instead of on a separate page (for HTML and Man pages) or section (for LaTeX
-# and RTF).
-#
-# Note that this feature does not work in combination with
-# SEPARATE_MEMBER_PAGES.
-# The default value is: NO.
-
-INLINE_GROUPED_CLASSES = NO
-
-# When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and unions
-# with only public data fields or simple typedef fields will be shown inline in
-# the documentation of the scope in which they are defined (i.e. file,
-# namespace, or group documentation), provided this scope is documented. If set
-# to NO, structs, classes, and unions are shown on a separate page (for HTML and
-# Man pages) or section (for LaTeX and RTF).
-# The default value is: NO.
-
-INLINE_SIMPLE_STRUCTS = NO
-
-# When TYPEDEF_HIDES_STRUCT tag is enabled, a typedef of a struct, union, or
-# enum is documented as struct, union, or enum with the name of the typedef. So
-# typedef struct TypeS {} TypeT, will appear in the documentation as a struct
-# with name TypeT. When disabled the typedef will appear as a member of a file,
-# namespace, or class. And the struct will be named TypeS. This can typically be
-# useful for C code in case the coding convention dictates that all compound
-# types are typedef'ed and only the typedef is referenced, never the tag name.
-# The default value is: NO.
-
-TYPEDEF_HIDES_STRUCT = NO
-
-# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
-# cache is used to resolve symbols given their name and scope. Since this can be
-# an expensive process and often the same symbol appears multiple times in the
-# code, doxygen keeps a cache of pre-resolved symbols. If the cache is too small
-# doxygen will become slower. If the cache is too large, memory is wasted. The
-# cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range
-# is 0..9, the default is 0, corresponding to a cache size of 2^16=65536
-# symbols. At the end of a run doxygen will report the cache usage and suggest
-# the optimal cache size from a speed point of view.
-# Minimum value: 0, maximum value: 9, default value: 0.
-
-LOOKUP_CACHE_SIZE = 0
-
-#---------------------------------------------------------------------------
-# Build related configuration options
-#---------------------------------------------------------------------------
-
-# If the EXTRACT_ALL tag is set to YES, doxygen will assume all entities in
-# documentation are documented, even if no documentation was available. Private
-# class members and static file members will be hidden unless the
-# EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES.
-# Note: This will also disable the warnings about undocumented members that are
-# normally produced when WARNINGS is set to YES.
-# The default value is: NO.
-
-EXTRACT_ALL = YES
-
-# If the EXTRACT_PRIVATE tag is set to YES, all private members of a class will
-# be included in the documentation.
-# The default value is: NO.
-
-EXTRACT_PRIVATE = YES
-
-# If the EXTRACT_PACKAGE tag is set to YES, all members with package or internal
-# scope will be included in the documentation.
-# The default value is: NO.
-
-EXTRACT_PACKAGE = YES
-
-# If the EXTRACT_STATIC tag is set to YES, all static members of a file will be
-# included in the documentation.
-# The default value is: NO.
-
-EXTRACT_STATIC = YES
-
-# If the EXTRACT_LOCAL_CLASSES tag is set to YES, classes (and structs) defined
-# locally in source files will be included in the documentation. If set to NO,
-# only classes defined in header files are included. Does not have any effect
-# for Java sources.
-# The default value is: YES.
-
-EXTRACT_LOCAL_CLASSES = YES
-
-# This flag is only useful for Objective-C code. If set to YES, local methods,
-# which are defined in the implementation section but not in the interface are
-# included in the documentation. If set to NO, only methods in the interface are
-# included.
-# The default value is: NO.
-
-EXTRACT_LOCAL_METHODS = NO
-
-# If this flag is set to YES, the members of anonymous namespaces will be
-# extracted and appear in the documentation as a namespace called
-# 'anonymous_namespace{file}', where file will be replaced with the base name of
-# the file that contains the anonymous namespace. By default anonymous namespace
-# are hidden.
-# The default value is: NO.
-
-EXTRACT_ANON_NSPACES = NO
-
-# If the HIDE_UNDOC_MEMBERS tag is set to YES, doxygen will hide all
-# undocumented members inside documented classes or files. If set to NO these
-# members will be included in the various overviews, but no documentation
-# section is generated. This option has no effect if EXTRACT_ALL is enabled.
-# The default value is: NO.
-
-HIDE_UNDOC_MEMBERS = NO
-
-# If the HIDE_UNDOC_CLASSES tag is set to YES, doxygen will hide all
-# undocumented classes that are normally visible in the class hierarchy. If set
-# to NO, these classes will be included in the various overviews. This option
-# has no effect if EXTRACT_ALL is enabled.
-# The default value is: NO.
-
-HIDE_UNDOC_CLASSES = NO
-
-# If the HIDE_FRIEND_COMPOUNDS tag is set to YES, doxygen will hide all friend
-# (class|struct|union) declarations. If set to NO, these declarations will be
-# included in the documentation.
-# The default value is: NO.
-
-HIDE_FRIEND_COMPOUNDS = NO
-
-# If the HIDE_IN_BODY_DOCS tag is set to YES, doxygen will hide any
-# documentation blocks found inside the body of a function. If set to NO, these
-# blocks will be appended to the function's detailed documentation block.
-# The default value is: NO.
-
-HIDE_IN_BODY_DOCS = NO
-
-# The INTERNAL_DOCS tag determines if documentation that is typed after a
-# \internal command is included. If the tag is set to NO then the documentation
-# will be excluded. Set it to YES to include the internal documentation.
-# The default value is: NO.
-
-INTERNAL_DOCS = NO
-
-# If the CASE_SENSE_NAMES tag is set to NO then doxygen will only generate file
-# names in lower-case letters. If set to YES, upper-case letters are also
-# allowed. This is useful if you have classes or files whose names only differ
-# in case and if your file system supports case sensitive file names. Windows
-# and Mac users are advised to set this option to NO.
-# The default value is: system dependent.
-
-CASE_SENSE_NAMES = NO
-
-# If the HIDE_SCOPE_NAMES tag is set to NO then doxygen will show members with
-# their full class and namespace scopes in the documentation. If set to YES, the
-# scope will be hidden.
-# The default value is: NO.
-
-HIDE_SCOPE_NAMES = YES
-
-# If the HIDE_COMPOUND_REFERENCE tag is set to NO (default) then doxygen will
-# append additional text to a page's title, such as Class Reference. If set to
-# YES the compound reference will be hidden.
-# The default value is: NO.
-
-HIDE_COMPOUND_REFERENCE= NO
-
-# If the SHOW_INCLUDE_FILES tag is set to YES then doxygen will put a list of
-# the files that are included by a file in the documentation of that file.
-# The default value is: YES.
-
-SHOW_INCLUDE_FILES = YES
-
-# If the SHOW_GROUPED_MEMB_INC tag is set to YES then Doxygen will add for each
-# grouped member an include statement to the documentation, telling the reader
-# which file to include in order to use the member.
-# The default value is: NO.
-
-SHOW_GROUPED_MEMB_INC = NO
-
-# If the FORCE_LOCAL_INCLUDES tag is set to YES then doxygen will list include
-# files with double quotes in the documentation rather than with sharp brackets.
-# The default value is: NO.
-
-FORCE_LOCAL_INCLUDES = NO
-
-# If the INLINE_INFO tag is set to YES then a tag [inline] is inserted in the
-# documentation for inline members.
-# The default value is: YES.
-
-INLINE_INFO = YES
-
-# If the SORT_MEMBER_DOCS tag is set to YES then doxygen will sort the
-# (detailed) documentation of file and class members alphabetically by member
-# name. If set to NO, the members will appear in declaration order.
-# The default value is: YES.
-
-SORT_MEMBER_DOCS = YES
-
-# If the SORT_BRIEF_DOCS tag is set to YES then doxygen will sort the brief
-# descriptions of file, namespace and class members alphabetically by member
-# name. If set to NO, the members will appear in declaration order. Note that
-# this will also influence the order of the classes in the class list.
-# The default value is: NO.
-
-SORT_BRIEF_DOCS = NO
-
-# If the SORT_MEMBERS_CTORS_1ST tag is set to YES then doxygen will sort the
-# (brief and detailed) documentation of class members so that constructors and
-# destructors are listed first. If set to NO the constructors will appear in the
-# respective orders defined by SORT_BRIEF_DOCS and SORT_MEMBER_DOCS.
-# Note: If SORT_BRIEF_DOCS is set to NO this option is ignored for sorting brief
-# member documentation.
-# Note: If SORT_MEMBER_DOCS is set to NO this option is ignored for sorting
-# detailed member documentation.
-# The default value is: NO.
-
-SORT_MEMBERS_CTORS_1ST = NO
-
-# If the SORT_GROUP_NAMES tag is set to YES then doxygen will sort the hierarchy
-# of group names into alphabetical order. If set to NO the group names will
-# appear in their defined order.
-# The default value is: NO.
-
-SORT_GROUP_NAMES = NO
-
-# If the SORT_BY_SCOPE_NAME tag is set to YES, the class list will be sorted by
-# fully-qualified names, including namespaces. If set to NO, the class list will
-# be sorted only by class name, not including the namespace part.
-# Note: This option is not very useful if HIDE_SCOPE_NAMES is set to YES.
-# Note: This option applies only to the class list, not to the alphabetical
-# list.
-# The default value is: NO.
-
-SORT_BY_SCOPE_NAME = NO
-
-# If the STRICT_PROTO_MATCHING option is enabled and doxygen fails to do proper
-# type resolution of all parameters of a function it will reject a match between
-# the prototype and the implementation of a member function even if there is
-# only one candidate or it is obvious which candidate to choose by doing a
-# simple string match. By disabling STRICT_PROTO_MATCHING doxygen will still
-# accept a match between prototype and implementation in such cases.
-# The default value is: NO.
-
-STRICT_PROTO_MATCHING = NO
-
-# The GENERATE_TODOLIST tag can be used to enable (YES) or disable (NO) the todo
-# list. This list is created by putting \todo commands in the documentation.
-# The default value is: YES.
-
-GENERATE_TODOLIST = YES
-
-# The GENERATE_TESTLIST tag can be used to enable (YES) or disable (NO) the test
-# list. This list is created by putting \test commands in the documentation.
-# The default value is: YES.
-
-GENERATE_TESTLIST = YES
-
-# The GENERATE_BUGLIST tag can be used to enable (YES) or disable (NO) the bug
-# list. This list is created by putting \bug commands in the documentation.
-# The default value is: YES.
-
-GENERATE_BUGLIST = YES
-
-# The GENERATE_DEPRECATEDLIST tag can be used to enable (YES) or disable (NO)
-# the deprecated list. This list is created by putting \deprecated commands in
-# the documentation.
-# The default value is: YES.
-
-GENERATE_DEPRECATEDLIST= YES
-
-# The ENABLED_SECTIONS tag can be used to enable conditional documentation
-# sections, marked by \if ... \endif and \cond
-# ... \endcond blocks.
-
-ENABLED_SECTIONS =
-
-# The MAX_INITIALIZER_LINES tag determines the maximum number of lines that the
-# initial value of a variable or macro / define can have for it to appear in the
-# documentation. If the initializer consists of more lines than specified here
-# it will be hidden. Use a value of 0 to hide initializers completely. The
-# appearance of the value of individual variables and macros / defines can be
-# controlled using \showinitializer or \hideinitializer command in the
-# documentation regardless of this setting.
-# Minimum value: 0, maximum value: 10000, default value: 30.
-
-MAX_INITIALIZER_LINES = 30
-
-# Set the SHOW_USED_FILES tag to NO to disable the list of files generated at
-# the bottom of the documentation of classes and structs. If set to YES, the
-# list will mention the files that were used to generate the documentation.
-# The default value is: YES.
-
-SHOW_USED_FILES = YES
-
-# Set the SHOW_FILES tag to NO to disable the generation of the Files page. This
-# will remove the Files entry from the Quick Index and from the Folder Tree View
-# (if specified).
-# The default value is: YES.
-
-SHOW_FILES = YES
-
-# Set the SHOW_NAMESPACES tag to NO to disable the generation of the Namespaces
-# page. This will remove the Namespaces entry from the Quick Index and from the
-# Folder Tree View (if specified).
-# The default value is: YES.
-
-SHOW_NAMESPACES = YES
-
-# The FILE_VERSION_FILTER tag can be used to specify a program or script that
-# doxygen should invoke to get the current version for each file (typically from
-# the version control system). Doxygen will invoke the program by executing (via
-# popen()) the command command input-file, where command is the value of the
-# FILE_VERSION_FILTER tag, and input-file is the name of an input file provided
-# by doxygen. Whatever the program writes to standard output is used as the file
-# version. For an example see the documentation.
-
-FILE_VERSION_FILTER =
-
-# The LAYOUT_FILE tag can be used to specify a layout file which will be parsed
-# by doxygen. The layout file controls the global structure of the generated
-# output files in an output format independent way. To create the layout file
-# that represents doxygen's defaults, run doxygen with the -l option. You can
-# optionally specify a file name after the option, if omitted DoxygenLayout.xml
-# will be used as the name of the layout file.
-#
-# Note that if you run doxygen from a directory containing a file called
-# DoxygenLayout.xml, doxygen will parse it automatically even if the LAYOUT_FILE
-# tag is left empty.
-
-LAYOUT_FILE =
-
-# The CITE_BIB_FILES tag can be used to specify one or more bib files containing
-# the reference definitions. This must be a list of .bib files. The .bib
-# extension is automatically appended if omitted. This requires the bibtex tool
-# to be installed. See also https://en.wikipedia.org/wiki/BibTeX for more info.
-# For LaTeX the style of the bibliography can be controlled using
-# LATEX_BIB_STYLE. To use this feature you need bibtex and perl available in the
-# search path. See also \cite for info how to create references.
-
-CITE_BIB_FILES =
-
-#---------------------------------------------------------------------------
-# Configuration options related to warning and progress messages
-#---------------------------------------------------------------------------
-
-# The QUIET tag can be used to turn on/off the messages that are generated to
-# standard output by doxygen. If QUIET is set to YES this implies that the
-# messages are off.
-# The default value is: NO.
-
-QUIET = NO
-
-# The WARNINGS tag can be used to turn on/off the warning messages that are
-# generated to standard error (stderr) by doxygen. If WARNINGS is set to YES
-# this implies that the warnings are on.
-#
-# Tip: Turn warnings on while writing the documentation.
-# The default value is: YES.
-
-WARNINGS = YES
-
-# If the WARN_IF_UNDOCUMENTED tag is set to YES then doxygen will generate
-# warnings for undocumented members. If EXTRACT_ALL is set to YES then this flag
-# will automatically be disabled.
-# The default value is: YES.
-
-WARN_IF_UNDOCUMENTED = YES
-
-# If the WARN_IF_DOC_ERROR tag is set to YES, doxygen will generate warnings for
-# potential errors in the documentation, such as not documenting some parameters
-# in a documented function, or documenting parameters that don't exist or using
-# markup commands wrongly.
-# The default value is: YES.
-
-WARN_IF_DOC_ERROR = YES
-
-# This WARN_NO_PARAMDOC option can be enabled to get warnings for functions that
-# are documented, but have no documentation for their parameters or return
-# value. If set to NO, doxygen will only warn about wrong or incomplete
-# parameter documentation, but not about the absence of documentation.
-# The default value is: NO.
-
-WARN_NO_PARAMDOC = NO
-
-# If the WARN_AS_ERROR tag is set to YES then doxygen will immediately stop when
-# a warning is encountered.
-# The default value is: NO.
-
-WARN_AS_ERROR = NO
-
-# The WARN_FORMAT tag determines the format of the warning messages that doxygen
-# can produce. The string should contain the $file, $line, and $text tags, which
-# will be replaced by the file and line number from which the warning originated
-# and the warning text. Optionally the format may contain $version, which will
-# be replaced by the version of the file (if it could be obtained via
-# FILE_VERSION_FILTER)
-# The default value is: $file:$line: $text.
-
-WARN_FORMAT = "$file:$line: $text"
-
-# The WARN_LOGFILE tag can be used to specify a file to which warning and error
-# messages should be written. If left blank the output is written to standard
-# error (stderr).
-
-WARN_LOGFILE =
-
-#---------------------------------------------------------------------------
-# Configuration options related to the input files
-#---------------------------------------------------------------------------
-
-# The INPUT tag is used to specify the files and/or directories that contain
-# documented source files. You may enter file names like myfile.cpp or
-# directories like /usr/src/myproject. Separate the files or directories with
-# spaces. See also FILE_PATTERNS and EXTENSION_MAPPING
-# Note: If this tag is empty the current directory is searched.
-
-INPUT = ../lib/include/openGJK/openGJK.h ../lib/ext ../include/openGJK/openGJK.h ../lib/src/openGJK.c ../README.md ../lib/example1_c/main.c ../lib/example3_csharp/main.cs ../lib/example2_mex/main.m
-
-# This tag can be used to specify the character encoding of the source files
-# that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
-# libiconv (or the iconv built into libc) for the transcoding. See the libiconv
-# documentation (see: https://www.gnu.org/software/libiconv/) for the list of
-# possible encodings.
-# The default value is: UTF-8.
-
-INPUT_ENCODING = UTF-8
-
-# If the value of the INPUT tag contains directories, you can use the
-# FILE_PATTERNS tag to specify one or more wildcard patterns (like *.cpp and
-# *.h) to filter out the source-files in the directories.
-#
-# Note that for custom extensions or not directly supported extensions you also
-# need to set EXTENSION_MAPPING for the extension otherwise the files are not
-# read by doxygen.
-#
-# If left blank the following patterns are tested:*.c, *.cc, *.cxx, *.cpp,
-# *.c++, *.java, *.ii, *.ixx, *.ipp, *.i++, *.inl, *.idl, *.ddl, *.odl, *.h,
-# *.hh, *.hxx, *.hpp, *.h++, *.cs, *.d, *.php, *.php4, *.php5, *.phtml, *.inc,
-# *.m, *.markdown, *.md, *.mm, *.dox, *.py, *.pyw, *.f90, *.f95, *.f03, *.f08,
-# *.f, *.for, *.tcl, *.vhd, *.vhdl, *.ucf and *.qsf.
-
-FILE_PATTERNS = *.c \
- *.h \
- *.cs \
- *.inc \
- *.m \
- *.md \
- *.dox \
- *.py \
- *.pyw
-
-# The RECURSIVE tag can be used to specify whether or not subdirectories should
-# be searched for input files as well.
-# The default value is: NO.
-
-RECURSIVE = YES
-
-# The EXCLUDE tag can be used to specify files and/or directories that should be
-# excluded from the INPUT source files. This way you can easily exclude a
-# subdirectory from a directory tree whose root is specified with the INPUT tag.
-#
-# Note that relative paths are relative to the directory from which doxygen is
-# run.
-
-EXCLUDE =
-
-# The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
-# directories that are symbolic links (a Unix file system feature) are excluded
-# from the input.
-# The default value is: NO.
-
-EXCLUDE_SYMLINKS = NO
-
-# If the value of the INPUT tag contains directories, you can use the
-# EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude
-# certain files from those directories.
-#
-# Note that the wildcards are matched against the file with absolute path, so to
-# exclude all test directories for example use the pattern */test/*
-
-EXCLUDE_PATTERNS =
-
-# The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names
-# (namespaces, classes, functions, etc.) that should be excluded from the
-# output. The symbol name can be a fully qualified name, a word, or if the
-# wildcard * is used, a substring. Examples: ANamespace, AClass,
-# AClass::ANamespace, ANamespace::*Test
-#
-# Note that the wildcards are matched against the file with absolute path, so to
-# exclude all test directories use the pattern */test/*
-
-EXCLUDE_SYMBOLS =
-
-# The EXAMPLE_PATH tag can be used to specify one or more files or directories
-# that contain example code fragments that are included (see the \include
-# command).
-
-EXAMPLE_PATH =
-
-# If the value of the EXAMPLE_PATH tag contains directories, you can use the
-# EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp and
-# *.h) to filter out the source-files in the directories. If left blank all
-# files are included.
-
-EXAMPLE_PATTERNS = *
-
-# If the EXAMPLE_RECURSIVE tag is set to YES then subdirectories will be
-# searched for input files to be used with the \include or \dontinclude commands
-# irrespective of the value of the RECURSIVE tag.
-# The default value is: NO.
-
-EXAMPLE_RECURSIVE = NO
-
-# The IMAGE_PATH tag can be used to specify one or more files or directories
-# that contain images that are to be included in the documentation (see the
-# \image command).
-
-IMAGE_PATH =
-
-# The INPUT_FILTER tag can be used to specify a program that doxygen should
-# invoke to filter for each input file. Doxygen will invoke the filter program
-# by executing (via popen()) the command:
-#
-#
-#
-# where is the value of the INPUT_FILTER tag, and is the
-# name of an input file. Doxygen will then use the output that the filter
-# program writes to standard output. If FILTER_PATTERNS is specified, this tag
-# will be ignored.
-#
-# Note that the filter must not add or remove lines; it is applied before the
-# code is scanned, but not when the output code is generated. If lines are added
-# or removed, the anchors will not be placed correctly.
-#
-# Note that for custom extensions or not directly supported extensions you also
-# need to set EXTENSION_MAPPING for the extension otherwise the files are not
-# properly processed by doxygen.
-
-INPUT_FILTER =
-
-# The FILTER_PATTERNS tag can be used to specify filters on a per file pattern
-# basis. Doxygen will compare the file name with each pattern and apply the
-# filter if there is a match. The filters are a list of the form: pattern=filter
-# (like *.cpp=my_cpp_filter). See INPUT_FILTER for further information on how
-# filters are used. If the FILTER_PATTERNS tag is empty or if none of the
-# patterns match the file name, INPUT_FILTER is applied.
-#
-# Note that for custom extensions or not directly supported extensions you also
-# need to set EXTENSION_MAPPING for the extension otherwise the files are not
-# properly processed by doxygen.
-
-FILTER_PATTERNS =
-
-# If the FILTER_SOURCE_FILES tag is set to YES, the input filter (if set using
-# INPUT_FILTER) will also be used to filter the input files that are used for
-# producing the source files to browse (i.e. when SOURCE_BROWSER is set to YES).
-# The default value is: NO.
-
-FILTER_SOURCE_FILES = NO
-
-# The FILTER_SOURCE_PATTERNS tag can be used to specify source filters per file
-# pattern. A pattern will override the setting for FILTER_PATTERN (if any) and
-# it is also possible to disable source filtering for a specific pattern using
-# *.ext= (so without naming a filter).
-# This tag requires that the tag FILTER_SOURCE_FILES is set to YES.
-
-FILTER_SOURCE_PATTERNS =
-
-# If the USE_MDFILE_AS_MAINPAGE tag refers to the name of a markdown file that
-# is part of the input, its contents will be placed on the main page
-# (index.html). This can be useful if you have a project on for instance GitHub
-# and want to reuse the introduction page also for the doxygen output.
-
-USE_MDFILE_AS_MAINPAGE =
-
-#---------------------------------------------------------------------------
-# Configuration options related to source browsing
-#---------------------------------------------------------------------------
-
-# If the SOURCE_BROWSER tag is set to YES then a list of source files will be
-# generated. Documented entities will be cross-referenced with these sources.
-#
-# Note: To get rid of all source code in the generated output, make sure that
-# also VERBATIM_HEADERS is set to NO.
-# The default value is: NO.
-
-SOURCE_BROWSER = YES
-
-# Setting the INLINE_SOURCES tag to YES will include the body of functions,
-# classes and enums directly into the documentation.
-# The default value is: NO.
-
-INLINE_SOURCES = NO
-
-# Setting the STRIP_CODE_COMMENTS tag to YES will instruct doxygen to hide any
-# special comment blocks from generated source code fragments. Normal C, C++ and
-# Fortran comments will always remain visible.
-# The default value is: YES.
-
-STRIP_CODE_COMMENTS = YES
-
-# If the REFERENCED_BY_RELATION tag is set to YES then for each documented
-# function all documented functions referencing it will be listed.
-# The default value is: NO.
-
-REFERENCED_BY_RELATION = NO
-
-# If the REFERENCES_RELATION tag is set to YES then for each documented function
-# all documented entities called/used by that function will be listed.
-# The default value is: NO.
-
-REFERENCES_RELATION = NO
-
-# If the REFERENCES_LINK_SOURCE tag is set to YES and SOURCE_BROWSER tag is set
-# to YES then the hyperlinks from functions in REFERENCES_RELATION and
-# REFERENCED_BY_RELATION lists will link to the source code. Otherwise they will
-# link to the documentation.
-# The default value is: YES.
-
-REFERENCES_LINK_SOURCE = YES
-
-# If SOURCE_TOOLTIPS is enabled (the default) then hovering a hyperlink in the
-# source code will show a tooltip with additional information such as prototype,
-# brief description and links to the definition and documentation. Since this
-# will make the HTML file larger and loading of large files a bit slower, you
-# can opt to disable this feature.
-# The default value is: YES.
-# This tag requires that the tag SOURCE_BROWSER is set to YES.
-
-SOURCE_TOOLTIPS = YES
-
-# If the USE_HTAGS tag is set to YES then the references to source code will
-# point to the HTML generated by the htags(1) tool instead of doxygen built-in
-# source browser. The htags tool is part of GNU's global source tagging system
-# (see https://www.gnu.org/software/global/global.html). You will need version
-# 4.8.6 or higher.
-#
-# To use it do the following:
-# - Install the latest version of global
-# - Enable SOURCE_BROWSER and USE_HTAGS in the config file
-# - Make sure the INPUT points to the root of the source tree
-# - Run doxygen as normal
-#
-# Doxygen will invoke htags (and that will in turn invoke gtags), so these
-# tools must be available from the command line (i.e. in the search path).
-#
-# The result: instead of the source browser generated by doxygen, the links to
-# source code will now point to the output of htags.
-# The default value is: NO.
-# This tag requires that the tag SOURCE_BROWSER is set to YES.
-
-USE_HTAGS = NO
-
-# If the VERBATIM_HEADERS tag is set the YES then doxygen will generate a
-# verbatim copy of the header file for each class for which an include is
-# specified. Set to NO to disable this.
-# See also: Section \class.
-# The default value is: YES.
-
-VERBATIM_HEADERS = YES
-
-# If the CLANG_ASSISTED_PARSING tag is set to YES then doxygen will use the
-# clang parser (see: http://clang.llvm.org/) for more accurate parsing at the
-# cost of reduced performance. This can be particularly helpful with template
-# rich C++ code for which doxygen's built-in parser lacks the necessary type
-# information.
-# Note: The availability of this option depends on whether or not doxygen was
-# generated with the -Duse-libclang=ON option for CMake.
-# The default value is: NO.
-
-CLANG_ASSISTED_PARSING = NO
-
-# If clang assisted parsing is enabled you can provide the compiler with command
-# line options that you would normally use when invoking the compiler. Note that
-# the include paths will already be set by doxygen for the files and directories
-# specified with INPUT and INCLUDE_PATH.
-# This tag requires that the tag CLANG_ASSISTED_PARSING is set to YES.
-
-CLANG_OPTIONS =
-
-# If clang assisted parsing is enabled you can provide the clang parser with the
-# path to the compilation database (see:
-# http://clang.llvm.org/docs/HowToSetupToolingForLLVM.html) used when the files
-# were built. This is equivalent to specifying the "-p" option to a clang tool,
-# such as clang-check. These options will then be pased to the parser.
-# Note: The availability of this option depends on whether or not doxygen was
-# generated with the -Duse-libclang=ON option for CMake.
-# The default value is: 0.
-
-CLANG_COMPILATION_DATABASE_PATH= 0
-
-#---------------------------------------------------------------------------
-# Configuration options related to the alphabetical class index
-#---------------------------------------------------------------------------
-
-# If the ALPHABETICAL_INDEX tag is set to YES, an alphabetical index of all
-# compounds will be generated. Enable this if the project contains a lot of
-# classes, structs, unions or interfaces.
-# The default value is: YES.
-
-ALPHABETICAL_INDEX = YES
-
-# The COLS_IN_ALPHA_INDEX tag can be used to specify the number of columns in
-# which the alphabetical index list will be split.
-# Minimum value: 1, maximum value: 20, default value: 5.
-# This tag requires that the tag ALPHABETICAL_INDEX is set to YES.
-
-COLS_IN_ALPHA_INDEX = 5
-
-# In case all classes in a project start with a common prefix, all classes will
-# be put under the same header in the alphabetical index. The IGNORE_PREFIX tag
-# can be used to specify a prefix (or a list of prefixes) that should be ignored
-# while generating the index headers.
-# This tag requires that the tag ALPHABETICAL_INDEX is set to YES.
-
-IGNORE_PREFIX =
-
-#---------------------------------------------------------------------------
-# Configuration options related to the HTML output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_HTML tag is set to YES, doxygen will generate HTML output
-# The default value is: YES.
-
-GENERATE_HTML = YES
-
-# The HTML_OUTPUT tag is used to specify where the HTML docs will be put. If a
-# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
-# it.
-# The default directory is: html.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_OUTPUT = html
-
-# The HTML_FILE_EXTENSION tag can be used to specify the file extension for each
-# generated HTML page (for example: .htm, .php, .asp).
-# The default value is: .html.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_FILE_EXTENSION = .html
-
-# The HTML_HEADER tag can be used to specify a user-defined HTML header file for
-# each generated HTML page. If the tag is left blank doxygen will generate a
-# standard header.
-#
-# To get valid HTML the header file that includes any scripts and style sheets
-# that doxygen needs, which is dependent on the configuration options used (e.g.
-# the setting GENERATE_TREEVIEW). It is highly recommended to start with a
-# default header using
-# doxygen -w html new_header.html new_footer.html new_stylesheet.css
-# YourConfigFile
-# and then modify the file new_header.html. See also section "Doxygen usage"
-# for information on how to generate the default header that doxygen normally
-# uses.
-# Note: The header is subject to change so you typically have to regenerate the
-# default header when upgrading to a newer version of doxygen. For a description
-# of the possible markers and block names see the documentation.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_HEADER = openGJKcustomheader.html
-
-# The HTML_FOOTER tag can be used to specify a user-defined HTML footer for each
-# generated HTML page. If the tag is left blank doxygen will generate a standard
-# footer. See HTML_HEADER for more information on how to generate a default
-# footer and what special commands can be used inside the footer. See also
-# section "Doxygen usage" for information on how to generate the default footer
-# that doxygen normally uses.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_FOOTER = openGJKcustomfooter.html
-
-# The HTML_STYLESHEET tag can be used to specify a user-defined cascading style
-# sheet that is used by each HTML page. It can be used to fine-tune the look of
-# the HTML output. If left blank doxygen will generate a default style sheet.
-# See also section "Doxygen usage" for information on how to generate the style
-# sheet that doxygen normally uses.
-# Note: It is recommended to use HTML_EXTRA_STYLESHEET instead of this tag, as
-# it is more robust and this tag (HTML_STYLESHEET) will in the future become
-# obsolete.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_STYLESHEET = openGJKcustomstyle.css
-
-# The HTML_EXTRA_STYLESHEET tag can be used to specify additional user-defined
-# cascading style sheets that are included after the standard style sheets
-# created by doxygen. Using this option one can overrule certain style aspects.
-# This is preferred over using HTML_STYLESHEET since it does not replace the
-# standard style sheet and is therefore more robust against future updates.
-# Doxygen will copy the style sheet files to the output directory.
-# Note: The order of the extra style sheet files is of importance (e.g. the last
-# style sheet in the list overrules the setting of the previous ones in the
-# list). For an example see the documentation.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_EXTRA_STYLESHEET =
-
-# The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
-# other source files which should be copied to the HTML output directory. Note
-# that these files will be copied to the base HTML output directory. Use the
-# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
-# files. In the HTML_STYLESHEET file, use the file name only. Also note that the
-# files will be copied as-is; there are no commands or markers available.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_EXTRA_FILES =
-
-# The HTML_COLORSTYLE_HUE tag controls the color of the HTML output. Doxygen
-# will adjust the colors in the style sheet and background images according to
-# this color. Hue is specified as an angle on a colorwheel, see
-# https://en.wikipedia.org/wiki/Hue for more information. For instance the value
-# 0 represents red, 60 is yellow, 120 is green, 180 is cyan, 240 is blue, 300
-# purple, and 360 is red again.
-# Minimum value: 0, maximum value: 359, default value: 220.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_COLORSTYLE_HUE = 220
-
-# The HTML_COLORSTYLE_SAT tag controls the purity (or saturation) of the colors
-# in the HTML output. For a value of 0 the output will use grayscales only. A
-# value of 255 will produce the most vivid colors.
-# Minimum value: 0, maximum value: 255, default value: 100.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_COLORSTYLE_SAT = 100
-
-# The HTML_COLORSTYLE_GAMMA tag controls the gamma correction applied to the
-# luminance component of the colors in the HTML output. Values below 100
-# gradually make the output lighter, whereas values above 100 make the output
-# darker. The value divided by 100 is the actual gamma applied, so 80 represents
-# a gamma of 0.8, The value 220 represents a gamma of 2.2, and 100 does not
-# change the gamma.
-# Minimum value: 40, maximum value: 240, default value: 80.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_COLORSTYLE_GAMMA = 80
-
-# If the HTML_TIMESTAMP tag is set to YES then the footer of each generated HTML
-# page will contain the date and time when the page was generated. Setting this
-# to YES can help to show when doxygen was last run and thus if the
-# documentation is up to date.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_TIMESTAMP = NO
-
-# If the HTML_DYNAMIC_MENUS tag is set to YES then the generated HTML
-# documentation will contain a main index with vertical navigation menus that
-# are dynamically created via Javascript. If disabled, the navigation index will
-# consists of multiple levels of tabs that are statically embedded in every HTML
-# page. Disable this option to support browsers that do not have Javascript,
-# like the Qt help browser.
-# The default value is: YES.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_DYNAMIC_MENUS = YES
-
-# If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML
-# documentation will contain sections that can be hidden and shown after the
-# page has loaded.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_DYNAMIC_SECTIONS = NO
-
-# With HTML_INDEX_NUM_ENTRIES one can control the preferred number of entries
-# shown in the various tree structured indices initially; the user can expand
-# and collapse entries dynamically later on. Doxygen will expand the tree to
-# such a level that at most the specified number of entries are visible (unless
-# a fully collapsed tree already exceeds this amount). So setting the number of
-# entries 1 will produce a full collapsed tree by default. 0 is a special value
-# representing an infinite number of entries and will result in a full expanded
-# tree by default.
-# Minimum value: 0, maximum value: 9999, default value: 100.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-HTML_INDEX_NUM_ENTRIES = 100
-
-# If the GENERATE_DOCSET tag is set to YES, additional index files will be
-# generated that can be used as input for Apple's Xcode 3 integrated development
-# environment (see: https://developer.apple.com/tools/xcode/), introduced with
-# OSX 10.5 (Leopard). To create a documentation set, doxygen will generate a
-# Makefile in the HTML output directory. Running make will produce the docset in
-# that directory and running make install will install the docset in
-# ~/Library/Developer/Shared/Documentation/DocSets so that Xcode will find it at
-# startup. See https://developer.apple.com/tools/creatingdocsetswithdoxygen.html
-# for more information.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-GENERATE_DOCSET = NO
-
-# This tag determines the name of the docset feed. A documentation feed provides
-# an umbrella under which multiple documentation sets from a single provider
-# (such as a company or product suite) can be grouped.
-# The default value is: Doxygen generated docs.
-# This tag requires that the tag GENERATE_DOCSET is set to YES.
-
-DOCSET_FEEDNAME = "Doxygen generated docs"
-
-# This tag specifies a string that should uniquely identify the documentation
-# set bundle. This should be a reverse domain-name style string, e.g.
-# com.mycompany.MyDocSet. Doxygen will append .docset to the name.
-# The default value is: org.doxygen.Project.
-# This tag requires that the tag GENERATE_DOCSET is set to YES.
-
-DOCSET_BUNDLE_ID = org.doxygen.Project
-
-# The DOCSET_PUBLISHER_ID tag specifies a string that should uniquely identify
-# the documentation publisher. This should be a reverse domain-name style
-# string, e.g. com.mycompany.MyDocSet.documentation.
-# The default value is: org.doxygen.Publisher.
-# This tag requires that the tag GENERATE_DOCSET is set to YES.
-
-DOCSET_PUBLISHER_ID = org.doxygen.Publisher
-
-# The DOCSET_PUBLISHER_NAME tag identifies the documentation publisher.
-# The default value is: Publisher.
-# This tag requires that the tag GENERATE_DOCSET is set to YES.
-
-DOCSET_PUBLISHER_NAME = Oxford
-
-# If the GENERATE_HTMLHELP tag is set to YES then doxygen generates three
-# additional HTML index files: index.hhp, index.hhc, and index.hhk. The
-# index.hhp is a project file that can be read by Microsoft's HTML Help Workshop
-# (see: http://www.microsoft.com/en-us/download/details.aspx?id=21138) on
-# Windows.
-#
-# The HTML Help Workshop contains a compiler that can convert all HTML output
-# generated by doxygen into a single compiled HTML file (.chm). Compiled HTML
-# files are now used as the Windows 98 help format, and will replace the old
-# Windows help format (.hlp) on all Windows platforms in the future. Compressed
-# HTML files also contain an index, a table of contents, and you can search for
-# words in the documentation. The HTML workshop also contains a viewer for
-# compressed HTML files.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-GENERATE_HTMLHELP = NO
-
-# The CHM_FILE tag can be used to specify the file name of the resulting .chm
-# file. You can add a path in front of the file if the result should not be
-# written to the html output directory.
-# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
-
-CHM_FILE =
-
-# The HHC_LOCATION tag can be used to specify the location (absolute path
-# including file name) of the HTML help compiler (hhc.exe). If non-empty,
-# doxygen will try to run the HTML help compiler on the generated index.hhp.
-# The file has to be specified with full path.
-# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
-
-HHC_LOCATION =
-
-# The GENERATE_CHI flag controls if a separate .chi index file is generated
-# (YES) or that it should be included in the master .chm file (NO).
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
-
-GENERATE_CHI = NO
-
-# The CHM_INDEX_ENCODING is used to encode HtmlHelp index (hhk), content (hhc)
-# and project file content.
-# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
-
-CHM_INDEX_ENCODING =
-
-# The BINARY_TOC flag controls whether a binary table of contents is generated
-# (YES) or a normal table of contents (NO) in the .chm file. Furthermore it
-# enables the Previous and Next buttons.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
-
-BINARY_TOC = NO
-
-# The TOC_EXPAND flag can be set to YES to add extra items for group members to
-# the table of contents of the HTML help documentation and to the tree view.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
-
-TOC_EXPAND = NO
-
-# If the GENERATE_QHP tag is set to YES and both QHP_NAMESPACE and
-# QHP_VIRTUAL_FOLDER are set, an additional index file will be generated that
-# can be used as input for Qt's qhelpgenerator to generate a Qt Compressed Help
-# (.qch) of the generated HTML documentation.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-GENERATE_QHP = NO
-
-# If the QHG_LOCATION tag is specified, the QCH_FILE tag can be used to specify
-# the file name of the resulting .qch file. The path specified is relative to
-# the HTML output folder.
-# This tag requires that the tag GENERATE_QHP is set to YES.
-
-QCH_FILE =
-
-# The QHP_NAMESPACE tag specifies the namespace to use when generating Qt Help
-# Project output. For more information please see Qt Help Project / Namespace
-# (see: http://doc.qt.io/qt-4.8/qthelpproject.html#namespace).
-# The default value is: org.doxygen.Project.
-# This tag requires that the tag GENERATE_QHP is set to YES.
-
-QHP_NAMESPACE = org.doxygen.Project
-
-# The QHP_VIRTUAL_FOLDER tag specifies the namespace to use when generating Qt
-# Help Project output. For more information please see Qt Help Project / Virtual
-# Folders (see: http://doc.qt.io/qt-4.8/qthelpproject.html#virtual-folders).
-# The default value is: doc.
-# This tag requires that the tag GENERATE_QHP is set to YES.
-
-QHP_VIRTUAL_FOLDER = doc
-
-# If the QHP_CUST_FILTER_NAME tag is set, it specifies the name of a custom
-# filter to add. For more information please see Qt Help Project / Custom
-# Filters (see: http://doc.qt.io/qt-4.8/qthelpproject.html#custom-filters).
-# This tag requires that the tag GENERATE_QHP is set to YES.
-
-QHP_CUST_FILTER_NAME =
-
-# The QHP_CUST_FILTER_ATTRS tag specifies the list of the attributes of the
-# custom filter to add. For more information please see Qt Help Project / Custom
-# Filters (see: http://doc.qt.io/qt-4.8/qthelpproject.html#custom-filters).
-# This tag requires that the tag GENERATE_QHP is set to YES.
-
-QHP_CUST_FILTER_ATTRS =
-
-# The QHP_SECT_FILTER_ATTRS tag specifies the list of the attributes this
-# project's filter section matches. Qt Help Project / Filter Attributes (see:
-# http://doc.qt.io/qt-4.8/qthelpproject.html#filter-attributes).
-# This tag requires that the tag GENERATE_QHP is set to YES.
-
-QHP_SECT_FILTER_ATTRS =
-
-# The QHG_LOCATION tag can be used to specify the location of Qt's
-# qhelpgenerator. If non-empty doxygen will try to run qhelpgenerator on the
-# generated .qhp file.
-# This tag requires that the tag GENERATE_QHP is set to YES.
-
-QHG_LOCATION =
-
-# If the GENERATE_ECLIPSEHELP tag is set to YES, additional index files will be
-# generated, together with the HTML files, they form an Eclipse help plugin. To
-# install this plugin and make it available under the help contents menu in
-# Eclipse, the contents of the directory containing the HTML and XML files needs
-# to be copied into the plugins directory of eclipse. The name of the directory
-# within the plugins directory should be the same as the ECLIPSE_DOC_ID value.
-# After copying Eclipse needs to be restarted before the help appears.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-GENERATE_ECLIPSEHELP = NO
-
-# A unique identifier for the Eclipse help plugin. When installing the plugin
-# the directory name containing the HTML and XML files should also have this
-# name. Each documentation set should have its own identifier.
-# The default value is: org.doxygen.Project.
-# This tag requires that the tag GENERATE_ECLIPSEHELP is set to YES.
-
-ECLIPSE_DOC_ID = org.doxygen.Project
-
-# If you want full control over the layout of the generated HTML pages it might
-# be necessary to disable the index and replace it with your own. The
-# DISABLE_INDEX tag can be used to turn on/off the condensed index (tabs) at top
-# of each HTML page. A value of NO enables the index and the value YES disables
-# it. Since the tabs in the index contain the same information as the navigation
-# tree, you can set this option to YES if you also set GENERATE_TREEVIEW to YES.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-DISABLE_INDEX = NO
-
-# The GENERATE_TREEVIEW tag is used to specify whether a tree-like index
-# structure should be generated to display hierarchical information. If the tag
-# value is set to YES, a side panel will be generated containing a tree-like
-# index structure (just like the one that is generated for HTML Help). For this
-# to work a browser that supports JavaScript, DHTML, CSS and frames is required
-# (i.e. any modern browser). Windows users are probably better off using the
-# HTML help feature. Via custom style sheets (see HTML_EXTRA_STYLESHEET) one can
-# further fine-tune the look of the index. As an example, the default style
-# sheet generated by doxygen has an example that shows how to put an image at
-# the root of the tree instead of the PROJECT_NAME. Since the tree basically has
-# the same information as the tab index, you could consider setting
-# DISABLE_INDEX to YES when enabling this option.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-GENERATE_TREEVIEW = NO
-
-# The ENUM_VALUES_PER_LINE tag can be used to set the number of enum values that
-# doxygen will group on one line in the generated HTML documentation.
-#
-# Note that a value of 0 will completely suppress the enum values from appearing
-# in the overview section.
-# Minimum value: 0, maximum value: 20, default value: 4.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-ENUM_VALUES_PER_LINE = 4
-
-# If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be used
-# to set the initial width (in pixels) of the frame in which the tree is shown.
-# Minimum value: 0, maximum value: 1500, default value: 250.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-TREEVIEW_WIDTH = 250
-
-# If the EXT_LINKS_IN_WINDOW option is set to YES, doxygen will open links to
-# external symbols imported via tag files in a separate window.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-EXT_LINKS_IN_WINDOW = NO
-
-# Use this tag to change the font size of LaTeX formulas included as images in
-# the HTML documentation. When you change the font size after a successful
-# doxygen run you need to manually remove any form_*.png images from the HTML
-# output directory to force them to be regenerated.
-# Minimum value: 8, maximum value: 50, default value: 10.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-FORMULA_FONTSIZE = 12
-
-# Use the FORMULA_TRANSPARENT tag to determine whether or not the images
-# generated for formulas are transparent PNGs. Transparent PNGs are not
-# supported properly for IE 6.0, but are supported on all modern browsers.
-#
-# Note that when changing this option you need to delete any form_*.png files in
-# the HTML output directory before the changes have effect.
-# The default value is: YES.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-FORMULA_TRANSPARENT = YES
-
-# Enable the USE_MATHJAX option to render LaTeX formulas using MathJax (see
-# https://www.mathjax.org) which uses client side Javascript for the rendering
-# instead of using pre-rendered bitmaps. Use this if you do not have LaTeX
-# installed or if you want to formulas look prettier in the HTML output. When
-# enabled you may also need to install MathJax separately and configure the path
-# to it using the MATHJAX_RELPATH option.
-# The default value is: NO.
-# This tag requires that the tag GENERATE_HTML is set to YES.
-
-USE_MATHJAX = NO
-
-# When MathJax is enabled you can set the default output format to be used for
-# the MathJax output. See the MathJax site (see:
-# http://docs.mathjax.org/en/latest/output.html) for more details.
-# Possible values are: HTML-CSS (which is slower, but has the best
-# compatibility), NativeMML (i.e. MathML) and SVG.
-# The default value is: HTML-CSS.
-# This tag requires that the tag USE_MATHJAX is set to YES.
-
-MATHJAX_FORMAT = HTML-CSS
-
-# When MathJax is enabled you need to specify the location relative to the HTML
-# output directory using the MATHJAX_RELPATH option. The destination directory
-# should contain the MathJax.js script. For instance, if the mathjax directory
-# is located at the same level as the HTML output directory, then
-# MATHJAX_RELPATH should be ../mathjax. The default value points to the MathJax
-# Content Delivery Network so you can quickly see the result without installing
-# MathJax. However, it is strongly recommended to install a local copy of
-# MathJax from https://www.mathjax.org before deployment.
-# The default value is: http://cdn.mathjax.org/mathjax/latest.
-# This tag requires that the tag USE_MATHJAX is set to YES.
-
-MATHJAX_RELPATH = https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/
-
-# The MATHJAX_EXTENSIONS tag can be used to specify one or more MathJax
-# extension names that should be enabled during MathJax rendering. For example
-# MATHJAX_EXTENSIONS = TeX/AMSmath TeX/AMSsymbols
-# This tag requires that the tag USE_MATHJAX is set to YES.
-
-MATHJAX_EXTENSIONS =
-
-# The MATHJAX_CODEFILE tag can be used to specify a file with javascript pieces
-# of code that will be used on startup of the MathJax code. See the MathJax site
-# (see: http://docs.mathjax.org/en/latest/output.html) for more details. For an
-# example see the documentation.
-# This tag requires that the tag USE_MATHJAX is set to YES.
-
-MATHJAX_CODEFILE =
-
-# When the SEARCHENGINE tag is enabled doxygen will generate a search box for
-# the HTML output. The underlying search engine uses javascript and DHTML and
-# should work on any modern browser. Note that when using HTML help
-# (GENERATE_HTMLHELP), Qt help (GENERATE_QHP), or docsets (GENERATE_DOCSET)
-# there is already a search function so this one should typically be disabled.
-# For large projects the javascript based search engine can be slow, then
-# enabling SERVER_BASED_SEARCH may provide a better solution. It is possible to
-# search using the keyboard; to jump to the search box use + S
-# (what the is depends on the OS and browser, but it is typically
-# , /