gff test

gff-test/.gitignore

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+*.zip
+ncbi_dataset/
+
+
+
+
+# Logs
+logs
+*.log
+npm-debug.log*
+yarn-debug.log*
+yarn-error.log*
+lerna-debug.log*
+.pnpm-debug.log*
+
+# Diagnostic reports (https://nodejs.org/api/report.html)
+report.[0-9]*.[0-9]*.[0-9]*.[0-9]*.json
+
+# Runtime data
+pids
+*.pid
+*.seed
+*.pid.lock
+
+# Directory for instrumented libs generated by jscoverage/JSCover
+lib-cov
+
+# Coverage directory used by tools like istanbul
+coverage
+*.lcov
+
+# nyc test coverage
+.nyc_output
+
+# Grunt intermediate storage (https://gruntjs.com/creating-plugins#storing-task-files)
+.grunt
+
+# Bower dependency directory (https://bower.io/)
+bower_components
+
+# node-waf configuration
+.lock-wscript
+
+# Compiled binary addons (https://nodejs.org/api/addons.html)
+build/Release
+
+# Dependency directories
+node_modules/
+jspm_packages/
+
+# Snowpack dependency directory (https://snowpack.dev/)
+web_modules/
+
+# TypeScript cache
+*.tsbuildinfo
+
+# Optional npm cache directory
+.npm
+
+# Optional eslint cache
+.eslintcache
+
+# Optional stylelint cache
+.stylelintcache
+
+# Microbundle cache
+.rpt2_cache/
+.rts2_cache_cjs/
+.rts2_cache_es/
+.rts2_cache_umd/
+
+# Optional REPL history
+.node_repl_history
+
+# Output of 'npm pack'
+*.tgz
+
+# Yarn Integrity file
+.yarn-integrity
+
+# dotenv environment variable files
+.env
+.env.development.local
+.env.test.local
+.env.production.local
+.env.local
+
+# parcel-bundler cache (https://parceljs.org/)
+.cache
+.parcel-cache
+
+# Next.js build output
+.next
+out
+
+# Nuxt.js build / generate output
+.nuxt
+dist
+
+# Gatsby files
+.cache/
+# Comment in the public line in if your project uses Gatsby and not Next.js
+# https://nextjs.org/blog/next-9-1#public-directory-support
+# public
+
+# vuepress build output
+.vuepress/dist
+
+# vuepress v2.x temp and cache directory
+.temp
+.cache
+
+# Docusaurus cache and generated files
+.docusaurus
+
+# Serverless directories
+.serverless/
+
+# FuseBox cache
+.fusebox/
+
+# DynamoDB Local files
+.dynamodb/
+
+# TernJS port file
+.tern-port
+
+# Stores VSCode versions used for testing VSCode extensions
+.vscode-test
+
+# yarn v2
+.yarn/cache
+.yarn/unplugged
+.yarn/build-state.yml
+.yarn/install-state.gz
+.pnp.*

gff-test/README.md

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+# GFF3 Format Support

gff-test/get-data.sh

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+mkdir -p data && \
+    curl -OJX GET "https://api.ncbi.nlm.nih.gov/datasets/v2alpha/genome/accession/GCF_000157115.2/download?include_annotation_type=GENOME_FASTA,GENOME_GFF,RNA_FASTA,CDS_FASTA,PROT_FASTA,SEQUENCE_REPORT&filename=GCF_000157115.2.zip" -H "Accept: application/zip" && \
+	unzip -j GCF_000157115.2.zip ncbi_dataset/ ./ncbi_dataset/ && \
+	rm GCF_000157115.2.zip

gff-test/index.js

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+const gff = require("@gmod/gff").default;
+const fs = require('fs');
+
+let items = 20;
+
+fs.createReadStream("./ncbi_dataset/data/GCF_000157115.2/genomic.gff")
+    .pipe(gff.parseStream({parseAll: true}))
+    .on('data', data => {
+        if (items > 0) {
+            console.log(data);
+            items -= 1;
+        }
+        else process.exit(0);
+    })

gff-test/package.json

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+{
+  "name": "gff-test",
+  "version": "0.1.0",
+  "main": "index.js",
+  "license": "MIT",
+  "scripts": {
+    "start": "node index.js"
+  },
+  "dependencies": {
+    "@gmod/gff": "^1.3.0"
+  }
+}

gff-test/yarn.lock

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+# THIS IS AN AUTOGENERATED FILE. DO NOT EDIT THIS FILE DIRECTLY.
+# yarn lockfile v1
+
+
+"@gmod/gff@^1.3.0":
+  version "1.3.0"
+  resolved "https://registry.yarnpkg.com/@gmod/gff/-/gff-1.3.0.tgz#d231a6f807cfb8f191c26c6410021c17155e4093"
+  integrity sha512-OjEnQLR6iIcrau603blFfUkmnWGDVfOu/LQoJNa7TsvKnjWlHYPlvqb5h2IV7wI+zElDY648mQ9zrElt2uR80A==
+  dependencies:
+    stream-browserify "^3.0.0"
+
+inherits@^2.0.3, inherits@~2.0.4:
+  version "2.0.4"
+  resolved "https://registry.yarnpkg.com/inherits/-/inherits-2.0.4.tgz#0fa2c64f932917c3433a0ded55363aae37416b7c"
+  integrity sha512-k/vGaX4/Yla3WzyMCvTQOXYeIHvqOKtnqBduzTHpzpQZzAskKMhZ2K+EnBiSM9zGSoIFeMpXKxa4dYeZIQqewQ==
+
+readable-stream@^3.5.0:
+  version "3.6.0"
+  resolved "https://registry.yarnpkg.com/readable-stream/-/readable-stream-3.6.0.tgz#337bbda3adc0706bd3e024426a286d4b4b2c9198"
+  integrity sha512-BViHy7LKeTz4oNnkcLJ+lVSL6vpiFeX6/d3oSH8zCW7UxP2onchk+vTGB143xuFjHS3deTgkKoXXymXqymiIdA==
+  dependencies:
+    inherits "^2.0.3"
+    string_decoder "^1.1.1"
+    util-deprecate "^1.0.1"
+
+safe-buffer@~5.2.0:
+  version "5.2.1"
+  resolved "https://registry.yarnpkg.com/safe-buffer/-/safe-buffer-5.2.1.tgz#1eaf9fa9bdb1fdd4ec75f58f9cdb4e6b7827eec6"
+  integrity sha512-rp3So07KcdmmKbGvgaNxQSJr7bGVSVk5S9Eq1F+ppbRo70+YeaDxkw5Dd8NPN+GD6bjnYm2VuPuCXmpuYvmCXQ==
+
+stream-browserify@^3.0.0:
+  version "3.0.0"
+  resolved "https://registry.yarnpkg.com/stream-browserify/-/stream-browserify-3.0.0.tgz#22b0a2850cdf6503e73085da1fc7b7d0c2122f2f"
+  integrity sha512-H73RAHsVBapbim0tU2JwwOiXUj+fikfiaoYAKHF3VJfA0pe2BCzkhAHBlLG6REzE+2WNZcxOXjK7lkso+9euLA==
+  dependencies:
+    inherits "~2.0.4"
+    readable-stream "^3.5.0"
+
+string_decoder@^1.1.1:
+  version "1.3.0"
+  resolved "https://registry.yarnpkg.com/string_decoder/-/string_decoder-1.3.0.tgz#42f114594a46cf1a8e30b0a84f56c78c3edac21e"
+  integrity sha512-hkRX8U1WjJFd8LsDJ2yQ/wWWxaopEsABU1XfkM8A+j0+85JAGppt16cr1Whg6KIbb4okU6Mql6BOj+uup/wKeA==
+  dependencies:
+    safe-buffer "~5.2.0"
+
+util-deprecate@^1.0.1:
+  version "1.0.2"
+  resolved "https://registry.yarnpkg.com/util-deprecate/-/util-deprecate-1.0.2.tgz#450d4dc9fa70de732762fbd2d4a28981419a0ccf"
+  integrity sha512-EPD5q1uXyFxJpCrLnCc1nHnq3gOa6DZBocAIiI2TaSCA7VCJ1UJDMagCzIkXNsUYfD1daK//LTEQ8xiIbrHtcw==